motifscan 0.1.8

A fast, streaming, low-memory CLI and Rust library for exact DNA motif scanning in FASTA and FASTQ files.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "motifscan"
version = "0.1.8"
authors = ["Jie Hua <fdjiehua@gmail.com>"]
build = false
exclude = [
    ".github/**",
    ".gitignore",
    "doc/agent.md",
    "doc/benchmark.sh",
    "doc/logo.af",
    "doc/logo.png",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A fast, streaming, low-memory CLI and Rust library for exact DNA motif scanning in FASTA and FASTQ files."
homepage = "https://github.com/jiehua1995/MotifScan"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "motif",
    "fasta",
    "fastq",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/jiehua1995/MotifScan"

[lib]
name = "motifscan"
path = "src/lib.rs"

[[bin]]
name = "motifscan"
path = "src/main.rs"

[dependencies.aho-corasick]
version = "0.7"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.csv]
version = "1.3"

[dependencies.flate2]
version = "1.0"

[dependencies.indicatif]
version = "0.17"

[dependencies.memchr]
version = "2.7"

[dependencies.num_cpus]
version = "1.16"

[dependencies.rayon]
version = "1.10"

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"
features = [
    "env-filter",
    "fmt",
]

[dev-dependencies.tempfile]
version = "3.13"

[profile.release]
lto = true
codegen-units = 1
strip = true