molcrafts-molpack 0.1.0

Faithful Rust port of Packmol molecular packing (split off from molrs)
Documentation
# Installation

## From PyPI

```bash
pip install molcrafts-molpack
```

The PyPI package `molcrafts-molpack` installs a Python module named `molpack`:

```python
import molpack
```

Pre-built wheels are published for CPython 3.12–3.13 on Linux (x86_64,
aarch64), macOS (x86_64, arm64), and Windows (x86_64).

## With `molcrafts-molrs` (recommended)

`molpack` accepts `molrs.Frame` objects directly — the recommended way
to load PDB and XYZ files:

```bash
pip install molcrafts-molpack molcrafts-molrs
```

```python
import molrs
from molpack import InsideBoxRestraint, Molpack, Target

frame = molrs.read_pdb("water.pdb")
water = (
    Target(frame, count=100)
    .with_name("water")
    .with_restraint(InsideBoxRestraint([0.0, 0.0, 0.0], [40.0, 40.0, 40.0]))
)
frame = Molpack().with_seed(42).pack([water], max_loops=200)
```

`Target` takes a `molrs.Frame` (or a `molpy.Frame`), resolved zero-copy
through its FFI capsule, so one of `molcrafts-molrs` / `molcrafts-molpy`
is required to build targets from a structure.

## Building from source

Requires a Rust toolchain (1.91+) and `maturin`:

```bash
git clone https://github.com/MolCrafts/molpack
cd molpack/python
pip install maturin
maturin develop --release
```

This builds against the local `molpack` Rust crate under `../`.

## Verification

```python
import molrs
from molpack import Target

frame = molrs.Frame.from_dict({
    "blocks": {"atoms": {"x": [0.0], "y": [0.0], "z": [0.0], "element": ["O"]}}
})
target = Target(frame, count=1).with_name("mol")
print(target)  # Target(natoms=1, count=1, name=Some("mol"))
```