mm2 0.26.0

minimap2 frontend
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "mm2"
version = "0.26.0"
build = false
exclude = ["test_data/*"]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "minimap2 frontend"
readme = "README.md"
license = "MIT"
repository = "https://github.com/keithyin/mm2"

[lib]
name = "mm2"
path = "src/lib.rs"

[[bin]]
name = "bam-rw"
path = "src/bin/bam-rw.rs"

[[bin]]
name = "gsmm2"
path = "src/bin/gsmm2.rs"

[[bin]]
name = "gsmm2-aligned-metric"
path = "src/bin/gsmm2-aligned-metric.rs"

[[bin]]
name = "gsmm2-hp-tr-metric"
path = "src/bin/gsmm2-hp-tr-metric.rs"

[[bin]]
name = "gsmm2-time-err"
path = "src/bin/gsmm2-time-err.rs"

[dependencies.anyhow]
version = "1.0.82"

[dependencies.bio]
version = "1.6.0"

[dependencies.clap]
version = "4.4"
features = ["derive"]

[dependencies.crossbeam]
version = "0.8"

[dependencies.glob]
version = "0.3.1"

[dependencies.gskits]
version = "0.15.12"

[dependencies.hp_tr_finder]
version = "0.2.3"

[dependencies.indicatif]
version = "0.17.7"

[dependencies.lazy_static]
version = "1.4.0"

[dependencies.minimap2]
version = "=0.1.23"

[dependencies.num_cpus]
version = "1.16"

[dependencies.rayon]
version = "1.8.1"

[dependencies.regex]
version = "1"

[dependencies.rust-htslib]
version = "0.49"

[dependencies.time]
version = "0.3.34"

[dependencies.tracing]
version = "0.1.40"

[dependencies.tracing-subscriber]
version = "0.3.18"
features = [
    "json",
    "env-filter",
    "fmt",
    "time",
    "local-time",
]

[dependencies.uuid]
version = "1.0"
features = ["v5"]

[profile.release]
debug = 2