mm2 0.13.0

minimap2 frontend
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42



requirements
* samtools : https://www.htslib.org/download/

```
# install samtools

cd samtools-1.x    # and similarly for bcftools and htslib
./configure --prefix=/usr/
make
make install
```



```
cargo install mm2

gsmm2 align -q query.fa --target target.fa -p query2target
```


# changelog

## 0.11.0

* np_range & rq_range. 
* discard multiple alignment reads


## 0.9.0

* dump qual if the query file is bam or fastq. if query file is fa, the qual will be [255; query_len]

## 0.6.0

* if the query file is bam format, it will try to dump np & ch & rq to the result bam

## 0.5.0

* if the query file is bam format, it will try to dump np & ch to the result bam