ID AM236082; SV 1; linear; genomic DNA; STD; PRO; 6666 BP.
XX
AC AM236082;
XX
PR Project:PRJNA344;
XX
DT 04-MAY-2006 (Rel. 87, Created)
DT 06-FEB-2015 (Rel. 123, Last updated, Version 9)
XX
DE Rhizobium leguminosarum bv. viciae plasmid pRL8 complete genome, strain
DE 3841
XX
KW complete genome.
XX
OS Rhizobium leguminosarum bv. viciae 3841
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae;
OC Rhizobium/Agrobacterium group; Rhizobium.
OG Plasmid pRL8
XX
RN [1]
RP 1-147463
RA Crossman L.C.;
RT ;
RL Submitted (21-FEB-2006) to the INSDC.
RL Crossman L.C., Pathogen Sequencing Unit, The Wellcome Trust Sanger
RL Institute, Hinxton, Cambridge, Cambridgeshire, CB10 1SA, UNITED KINGDOM.
XX
RN [2]
RX DOI; 10.1186/gb-2006-7-4-r34.
RX PUBMED; 16640791.
RA Young J.W., Crossman L.C., Johnston A.W.B., Thomson N.R., Ghazoui Z.F.,
RA Hull K.H., Wexler M., Curson A.R.J., Todd J.D., Poole P.S., Mauchline T.H.,
RA East A.K., Quail M.A., Churcher C., Arrowsmith C., Cherevach A.,
RA Chillingworth T., Clarke K., Cronin A., Davis P., Fraser A., Hance Z.,
RA Hauser H., Jagels K., Moule S., Mungall K., Norbertczak H.,
RA Rabbinowitsch E., Sanders M., Simmonds M., Whitehead S., Parkhill J.;
RT "The genome of Rhizobium leguminosarum has recognizable core and accessory
RT components";
RL Genome Biol. 7(4):R34-R34(2006).
XX
DR MD5; 8fe097fb2b9f874c5d043fe59cea066c.
DR BioSample; SAMEA1705944.
DR EnsemblGenomes-Gn; EBG00001182864.
DR EnsemblGenomes-Gn; pRL80017.
DR EnsemblGenomes-Gn; pRL80039.
DR EnsemblGenomes-Gn; pRL80039A.
DR EnsemblGenomes-Gn; pRL80050.
DR EnsemblGenomes-Gn; pRL80051.
DR EnsemblGenomes-Gn; pRL80055.
DR EnsemblGenomes-Gn; pRL80058.
DR EnsemblGenomes-Gn; pRL80089.
DR EnsemblGenomes-Gn; pRL80091.
DR EnsemblGenomes-Gn; pRL80106.
DR EnsemblGenomes-Tr; EBT00001761573.
DR EnsemblGenomes-Tr; pRL80017.
DR EnsemblGenomes-Tr; pRL80039.
DR EnsemblGenomes-Tr; pRL80039A.
DR EnsemblGenomes-Tr; pRL80050.
DR EnsemblGenomes-Tr; pRL80051.
DR EnsemblGenomes-Tr; pRL80055.
DR EnsemblGenomes-Tr; pRL80058.
DR EnsemblGenomes-Tr; pRL80089.
DR EnsemblGenomes-Tr; pRL80091.
DR EnsemblGenomes-Tr; pRL80106.
DR RFAM; RF00490; S-element.
XX
FH Key Location/Qualifiers
FH
FT source 1..>6666
FT /organism="Rhizobium leguminosarum bv. viciae 3841"
FT /plasmid="pRL8"
FT /strain="3841"
FT /mol_type="genomic DNA"
FT /country="United Kingdom"
FT /db_xref="taxon:216596"
FT CDS 1..1197
FT /transl_table=11
FT /gene="repAp8"
FT /locus_tag="pRL80001"
FT /product="replication protein RepA"
FT /db_xref="EnsemblGenomes-Gn:pRL80001"
FT /db_xref="EnsemblGenomes-Tr:CAK02801"
FT /db_xref="GOA:Q1M9K5"
FT /db_xref="InterPro:IPR000551"
FT /db_xref="InterPro:IPR017818"
FT /db_xref="InterPro:IPR025669"
FT /db_xref="InterPro:IPR027417"
FT /db_xref="UniProtKB/TrEMBL:Q1M9K5"
FT /protein_id="CAK02801.1"
FT /translation="MENPAQLQKAIHKLIAAHARDLSGALHEHRVKLYPPEARKTLRSF
FT SSIEAAKLIGVNDGYLRHLSLEGKGPQPEIGNNNRRSYSVETIQALREYLDENGKGDRR
FT YSPRRSGREHLQVITAVNFKGGSGKTTTAAHLAQYLALNGYRVLAIDLDPQASMSALHG
FT FQPEFDVGDNETLYGAVRYDEERRPLKDIIKKTYFANLDLVPGNLELMEFEHDTAKVLG
FT SNDRKNIFFTRMDDAIASVADDYDVVVVDCPPQLGFLTISALCAATAVLVTVHPQMLDV
FT MSMCQFLLMTSELLSVVADAGGSMNYDWMRYLVTRYEPGDGPQNQMVSFMRTMFGDHVL
FT NHPMLKSTAISDAGITKQTLYEVSRDQFTRATYDRAMESLDNVNSEIEQLIQSSWGRK"
FT misc_feature 1..6666
FT /colour=12
FT CDS 1321..2280
FT /transl_table=11
FT /gene="repBp8"
FT /locus_tag="pRL80002"
FT /product="replication protein RepB"
FT /db_xref="EnsemblGenomes-Gn:pRL80002"
FT /db_xref="EnsemblGenomes-Tr:CAK02802"
FT /db_xref="GOA:Q1M9K4"
FT /db_xref="InterPro:IPR003115"
FT /db_xref="InterPro:IPR004437"
FT /db_xref="InterPro:IPR011111"
FT /db_xref="InterPro:IPR017819"
FT /db_xref="InterPro:IPR036086"
FT /db_xref="InterPro:IPR037972"
FT /db_xref="UniProtKB/TrEMBL:Q1M9K4"
FT /protein_id="CAK02802.1"
FT /translation="MARKHLLSDLKAPASSSTEFDEARAADVPTPQYAPRGAIGAVSRS
FT IEALKSQGLSELDPELIDAPSVTDRLDEDGAQFEEFARNIRENGQQVPILVRPHPTVEG
FT RYQIAYGRRRLRAVKAAGLKVKAAIRNLTDDELVLAQGQENSARQDLSFIERALYAAQL
FT EASGYQRPVIMAALAVDKSNLSRLIQAATQLPDDVIRLIGAAPKTGRDRWYELSSRLAA
FT EGAAEKARALLSTSEVGSLGSDERFVRVFDAVAPKKSKKEKVQADVWQADDGVKAASFR
FT QDKRTLTLMIDKKAAPEFGEYLMSALPEIYASFKKSKQ"
FT CDS 2455..3672
FT /transl_table=11
FT /gene="repCp8"
FT /locus_tag="pRL80003"
FT /product="replication RepC protein"
FT /db_xref="EnsemblGenomes-Gn:pRL80003"
FT /db_xref="EnsemblGenomes-Tr:CAK02803"
FT /db_xref="InterPro:IPR005090"
FT /db_xref="InterPro:IPR021760"
FT /db_xref="UniProtKB/TrEMBL:Q1M9K3"
FT /protein_id="CAK02803.1"
FT /translation="METGYITTPFGRRPMTLALVKRQVKTEQAIADGSVDKWRVFRDIS
FT DARSRLGLQDRALAVLNALLTFFPVAELSNERNLVVFPSNAQLSARTNGIAGTTLRKCL
FT GSLVEAGVIIRKDSPNGKRYARKGKEGNIEDAYGFSLAPLLARAGEFASLAQDVAAEQR
FT RFRITKDRLTIVRRDVRKLITVGMEENLAGDWIAAETCFVEIVGRFVRHPTLQDLISSL
FT DEMSLLHEEVSRMLEIKEETAKSDGNAIPDGCHIQNSNTESCHELEPRSEKKQGEKSEP
FT NKKTERKDEPEAFPLSMVLRACPEINAFGPGGSIGSWREMMSAAVTVRSMLGVSPSAYQ
FT EACEVMGQAGAAIAIACIYQRGGHINSAGGYLRDLTGKARRGEFSLGPMLFTQLRANSG
FT TVKASA"
FT CDS 3811..6666
FT /transl_table=11
FT /locus_tag="pRL80004"
FT /product="hypothetical protein"
FT /note="no significant database hits"
FT /db_xref="EnsemblGenomes-Gn:pRL80004"
FT /db_xref="EnsemblGenomes-Tr:CAK02804"
FT /db_xref="InterPro:IPR003593"
FT /db_xref="InterPro:IPR027417"
FT /db_xref="UniProtKB/TrEMBL:Q1M9K2"
FT /protein_id="CAK02804.1"
FT /translation="MTEIVLPTENTIIAAAKKLDAAASQLVAETFFAIRHGMSINPIGR
FT NPDGQTIKGYPDITGRVPGEKKYLIEVTKDDWRTHLQSDLSKLSRLQKGAYAGFLLLCF
FT RKSESELTQSNRKKARETVQQAESRIEKLLGVQAGQVEFVFLGEFAREVRSAKYHRVLL
FT ALGLELVPAPFYTDLRFVQGLADFVPTAEEYEAESVVPRDEVSRTYERVFKNRLTLIEG
FT EGGSGKTSLALAVATEHRKQGEIFLFLDASVADWKSGSERARLVDVAAMFAESNVLIIL
FT DNVHLGDASGISELITNVQASGYDFRFLMTTRSSDEVEQWKRLGNIELLRRVPSGADVN
FT SAYHRLLTQKFPGSSFNDIPPAVTTRWSNQIPNLVILTLALEGLTKRGGYDRDWAIKVE
FT DAGTYLQAKFISKLSSDDVKQVGKIAALSLLEIPTSLRSLDHRVPKSAVDLGFVRLNSS
FT STTQRYELVHHELGKLITSFKDPDIKARLGEVMSADPFQATYIGLKLIGNGEASLAKEL
FT LSSVLSQSLTLSPDFSMGNSGGVFGILVQSNVTTYPEIERILLPDIGAFFDTKPDIVTG
FT LSSFLGAASENMERVYNAIVEKLAEQETIRRIEELLPSVGPTTFATLYRCANSRNLPFL
FT STLRKYLNRGKRIDSFAYRCRSESPSKVEICWGLIDEFFPHHKARFEVVLRSALAEGYI
FT ERLIPEELIESRSSRAVQTAIRCANSEVFKRYITFRDCSDATLLLLAHTMHDMGRNDLS
FT EVAADRVAGRTTSSIWYHRRTGGRALLTILRRASISAEGDVQKILMRLEAEGKMRAIVN
FT GMRPYRLANFIFVIWDRHEQFTSFISKTDLQEITNRRFKARAAEFSEERQASIYIAGIY
FT ALVGLDIPRDEWSAVDVTEDDFIGNQNNPVFWIGLKALEENGMIRLAHRSRFPTSVAAL
FT DTHSENTSRIMNDLKNWAATR"
SQ Sequence 6666 BP; 1576 A; 1743 C; 1876 G; 1471 T; 0 other;
gtggagaatc ccgctcagct tcagaaggct attcataaac tgatagcggc ccacgcgcga 60
gatctctcgg gcgcgcttca cgagcatcgt gtgaagcttt atccgcctga agctcgaaag 120
acgcttcggt cattttcgtc gatagaggct gcgaagctca ttggcgtcaa cgatggctat 180
ctccgccatc tttcgctcga gggtaagggg ccgcagcctg agatcggaaa taacaatcgc 240
cgttcgtatt cggtcgagac tattcaggcg ctccgcgagt atctcgacga gaacggcaag 300
ggtgaccgtc ggtactcacc acgccggagc ggtcgtgagc atttgcaggt tataaccgca 360
gtgaacttca agggaggcag cggtaagacc acgacggctg ctcatcttgc tcagtatctt 420
gcgcttaatg gataccgggt tcttgcgatt gatcttgatc cgcaggccag catgtccgct 480
ttgcacggat tccagcctga gtttgacgtt ggcgacaacg aaacgctcta cggcgccgtt 540
cgttatgatg aagagcggcg cccgctgaag gatataatca agaaaaccta ctttgcgaac 600
cttgatctcg ttccgggcaa cctcgagctt atggaattcg agcacgacac cgctaaagtg 660
ctcggctcta acgaccgcaa gaacatcttc ttcacgcgaa tggatgacgc aatcgcgtca 720
gtggcggacg actatgacgt tgtcgtcgtc gactgccctc cccagctcgg ctttctgacg 780
atctcggctc tatgcgcggc aaccgccgtt cttgttactg tacatcctca gatgctcgat 840
gtgatgtcga tgtgccagtt tctgctgatg acctcagaac ttctgagcgt cgttgcggat 900
gctggcggga gcatgaacta cgattggatg cgttatctcg ttacgcgcta cgagccggga 960
gacggaccgc aaaaccagat ggtgtcgttc atgcgcacga tgtttggcga ccatgtcctg 1020
aaccacccga tgctcaagag cacagccatt tcagacgcgg ggattactaa gcagactctc 1080
tatgaggtga gccgcgacca gttcacgcga gcaacatacg accgagccat ggaatcgctc 1140
gacaacgtga acagcgaaat cgaacaactc attcaatcat cttggggtcg caaatgatgg 1200
ctctagagat ctcagaaaac gcgacattga tggagaagtt gccagccgga aacttttcgg 1260
aatttgcact ctctatgtcg aggaatccgg cttgtcacga gtacctcagg ggaaagcaag 1320
atggctagaa aacacctcct ttcagatttg aaagctcctg cttcatcatc tacggagttc 1380
gatgaagcta gggctgcaga cgtccctact ccgcagtatg cgcctcgagg tgcaatcggt 1440
gccgtctcgc gatcgattga agctttgaag tcgcagggac tgagtgaact cgatcccgaa 1500
ctgatagatg cgccgtccgt tactgatcgc cttgatgagg atggggctca gtttgaggag 1560
ttcgctcgca acatccgtga gaatgggcag caggttccga ttcttgtccg gcctcacccg 1620
accgtggaag gacggtatca gattgcctac ggccggagac ggttgagagc ggtcaaggcg 1680
gccggcctca aggtcaaagc cgcaatcaga aatctgacag atgacgagct tgtactggcg 1740
caaggtcagg aaaacagcgc gcgtcaggat ctgtcgttta tcgagcgggc gctctatgca 1800
gcccagctcg aagcgagtgg ctaccagcgt cccgtcatca tggcagcgct ggctgtcgac 1860
aaaagtaacc tttcgcggtt gattcaggct gcgacccaat tgccggacga cgtcatccga 1920
ctaattggtg ctgcgcctaa gaccggccgt gatcgctggt acgagctatc atcgcggttg 1980
gctgcagaag gtgctgcgga gaaggcgcgc gctcttcttt cgactagcga ggttggctcc 2040
ctgggttctg atgagcgatt tgttcgcgtt ttcgacgcgg ttgcgccgaa gaaatctaag 2100
aaggaaaaag ttcaggcgga tgtctggcaa gctgacgatg gggtcaaggc tgcgagtttc 2160
cgccaggaca aacgaacact gacattgatg atcgacaaga aggcagcgcc ggaattcggt 2220
gagtacctga tgtcggctct ccccgagatc tacgcttcgt tcaagaagtc gaagcaatag 2280
atgagtcgta acgaagaaag gtgccgatag cgcaaagaaa aagccctccg aaacggtgtt 2340
ccagaaggcc tctctcagtt tggtcgctta gagaatcgca tttcccggaa tcacagtcaa 2400
gagtcaacgc cacaccggcg tagccttttc tttgccttgc gaaaggtgaa ggacatggaa 2460
acgggttata tcacgacgcc ctttgggcgg cggccgatga cgcttgctct ggtgaagcgt 2520
caggttaaga ccgagcaggc aatagcggat ggctcggtcg acaagtggcg cgtgtttcgc 2580
gacataagcg acgcccgctc acgccttggc cttcaagatc gagccttggc ggtcttgaat 2640
gcacttttaa cattcttccc agttgctgaa ctcagcaatg agaggaacct ggtcgtcttt 2700
ccatcaaatg ctcagctatc agcccgcaca aacggtatcg ctgggacaac tctgcgcaag 2760
tgcctcggtt cgctggtgga ggccggtgta atcatccgca aggatagccc taacggtaag 2820
cgatatgctc gaaaaggcaa agaaggaaac atagaggacg cctacggctt cagtctggca 2880
ccgcttcttg cgcgcgccgg cgagtttgct agcctcgccc aagacgtggc tgctgaacag 2940
cgccgcttcc gcatcacgaa agaccgcctc acgatcgttc ggcgagatgt ccgcaagctg 3000
atcaccgtcg ggatggaaga gaaccttgcc ggcgattgga ttgccgcgga aacgtgcttt 3060
gtcgagattg tgggaaggtt cgttcggcac ccgacgctcc aggacctgat ttcgagcctc 3120
gacgagatga gccttcttca cgaagaagtc tccaggatgc tggaaattaa agaagaaacc 3180
gcaaaaagtg atggcaatgc catcccggac ggatgccaca tacagaattc aaataccgaa 3240
tcctgccatg aacttgaacc ccgctccgaa aagaagcagg gcgaaaagtc cgagccaaac 3300
aagaaaacgg agcggaaaga cgaaccggaa gcgtttccgt tgtccatggt gttgcgtgcc 3360
tgcccggaga tcaacgcatt tggccctggt ggatcgattg gaagctggcg cgaaatgatg 3420
tcagcggcgg taacggttcg gtccatgctt ggcgtcagcc cctctgccta tcaggaggca 3480
tgcgaggtga tggggcaggc cggagcggcg atagcaatag cttgcattta ccagcgtggc 3540
gggcacatca actcggcggg gggatatctt cgggatctaa cggggaaggc gcggcgaggg 3600
gagttttcac ttgggccaat gctgtttacg caattgcggg cgaactcggg caccgtcaag 3660
gcgtcagcgt aggtcaaagt atcatgattg tttagcctaa ccggttgaac taattaacct 3720
attttgacta gtttccggct ggcaacttta tctcgatcta aagcgtcgag tgaatggcag 3780
aagataatct tcctgatggg cgtccgtata atgaccgaaa ttgtgcttcc gaccgaaaac 3840
acgatcatcg cggcagccaa aaaacttgac gcggccgcat cgcagctggt ggcagagacg 3900
ttctttgcca ttcggcatgg gatgtcaatc aatccaattg gtcgcaaccc ggatgggcag 3960
accatcaagg gataccctga cattactggg cgggtgccgg gtgagaagaa gtacctgatc 4020
gaagtcacga aggacgactg gcgcacacat cttcagagcg atctatcaaa actgtcccgc 4080
ctgcagaaag gagcctacgc gggtttccta cttctctgct tccgaaagtc cgagtccgaa 4140
ctcactcaaa gcaacaggaa gaaggcacgg gaaaccgtcc agcaggccga gagccggatt 4200
gaaaagcttt tgggtgtcca ggcaggacag gtagaattcg tctttcttgg cgagttcgcg 4260
cgtgaggtca gatcggcgaa ataccaccgc gtattgctgg ctctgggtct cgagcttgtg 4320
ccagcgccat tctacacgga tttgcgcttc gtgcagggct tagccgattt cgtaccgacc 4380
gctgaggaat atgaggctga gagtgttgtt cctcgcgatg aggtaagccg gacctatgag 4440
cgggtcttca aaaacagact aacgttgatc gaaggcgagg gcggtagcgg caaaacaagc 4500
ctggccctag ccgttgcgac ggagcatcgg aagcaaggcg agatctttct gttcttagac 4560
gcctctgtcg ctgactggaa gagcggttcg gagcgagctc gcctcgttga cgtagcggcg 4620
atgttcgcgg aatcgaatgt cctgattata ttggacaacg tacatctggg cgatgcgtcc 4680
ggcatttctg aactgattac aaatgtccag gcgtccggtt atgatttccg ctttttgatg 4740
acgacgcgca gcagcgacga agttgaacaa tggaagcgcc tgggaaatat cgagcttctc 4800
cgcagagttc cgtctggagc cgatgtcaac tctgcctatc accgcctgct cactcaaaag 4860
tttcccggaa gcagtttcaa cgatattccc ccagcggtga ccacacgatg gtcaaatcaa 4920
attcccaatc tggttattct cacgcttgct cttgaaggtc tcacaaagag aggcggctat 4980
gatcgcgatt gggcgatcaa ggttgaggac gcaggcacat accttcaagc taagttcatc 5040
tcgaagctgt cgtccgacga cgtcaaacag gtgggcaaga tcgctgcgct ctcacttctg 5100
gaaattccca cctcgctcag gtcgctcgac caccgggttc caaagtctgc tgtggatctg 5160
ggcttcgttc gtctgaactc gagttcaaca actcagcgat atgagctcgt tcaccacgaa 5220
ctgggcaagc tgatcacgtc cttcaaagat ccggatatca aggcgcggct gggagaggtg 5280
atgtccgctg atcccttcca ggcaacatat atcgggctga agcttatcgg aaacggagaa 5340
gccagcctgg caaaggaatt gttgtcgtca gtcctttctc aatcactcac actctcgcca 5400
gatttctcga tgggaaactc cggcggagtc ttcggtatcc tggtccagtc caacgtgact 5460
acctatcccg aaattgagcg tatccttctt cctgatatcg gcgccttttt cgatacaaag 5520
ccggatattg taaccggcct tagctccttc ctcggggctg cctccgaaaa catggagcgc 5580
gtatacaatg ccattgtgga aaaacttgcc gaacaggaaa cgattcgacg gatcgaagag 5640
cttctcccat ccgtcggccc gacgactttc gcgacacttt accgatgcgc gaactcacgg 5700
aacctcccgt ttctttcaac gcttcgaaaa tatctcaaca gagggaagcg tatagattcc 5760
tttgcctatc gatgcaggtc tgaaagtccg agtaaggtcg agatctgctg gggcctgatt 5820
gatgagttct ttccacacca caaggcccgg tttgaagttg tgcttcgctc tgccctcgcc 5880
gagggataca tcgagcgcct tatcccggaa gagcttattg agtctcgctc ttcaagggct 5940
gttcagacgg cgatccgatg cgcaaatagc gaagttttca aacggtacat cacgttccgt 6000
gactgcagcg acgcgacgct gttgcttctg gcccacacga tgcacgacat gggcaggaat 6060
gatctctcgg aggtcgcagc tgaccgagtt gcaggcagga cgacctcttc aatctggtat 6120
catcgtcgca ccggtggcag ggcgttgctg actattttgc ggagagcatc gatatctgca 6180
gaaggagatg ttcagaaaat tctgatgcgg cttgaggctg aaggaaaaat gagggccatt 6240
gtgaatggaa tgcggcctta tcgcctagcg aattttattt tcgtgatctg ggatcggcac 6300
gagcaattta cttcattcat ctcgaagaca gatcttcagg aaattacaaa ccgccggttc 6360
aaagcgcgag cggcagagtt ctctgaagag cgacaagcgt ccatctacat tgcaggaatc 6420
tatgcgctgg taggcctcga cataccgcgg gacgagtgga gcgcggtcga cgtcactgaa 6480
gacgatttca ttggaaacca gaacaacccg gtcttctgga tcggtctcaa ggctctggaa 6540
gaaaatggca tgatacgcct tgcccatcga agcagatttc cgacatctgt cgcggcgcta 6600
gatactcatt cggaaaacac cagccggatc atgaacgatt tgaaaaactg ggctgcgacc 6660
aggtaa 6666
//