microBioRust 0.1.3

Microbiology friendly bioinformatics Rust functions
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "microBioRust"
version = "0.1.3"
authors = ["Lisa Crossman and microBioRust community"]
build = false
exclude = [
    ".git",
    ".gitignore",
    ".dribble.example.embl",
    "tests/data/",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Microbiology friendly bioinformatics Rust functions"
documentation = "https://microbiorust.github.io/docs/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "micro",
    "bio",
    "genomics",
    "sequence-analysis",
]
categories = [
    "science::bioinformatics::sequence-analysis",
    "science::bioinformatics::genomics",
    "science::bioinformatics",
    "science",
    "data-structures",
]
license = "MIT"
repository = "https://github.com/microBioRust/microBioRust"

[lib]
name = "microBioRust"
path = "src/lib.rs"

[[example]]
name = "blast-example"
path = "examples/src/blast_parse.rs"

[[test]]
name = "blast_parser"
path = "tests/blast_parser.rs"

[[test]]
name = "create_new_record"
path = "tests/create_new_record.rs"

[[test]]
name = "embl_to_faa"
path = "tests/embl_to_faa.rs"

[[test]]
name = "embl_to_ffn"
path = "tests/embl_to_ffn.rs"

[[test]]
name = "embl_to_gff"
path = "tests/embl_to_gff.rs"

[[test]]
name = "genbank_to_faa"
path = "tests/genbank_to_faa.rs"

[[test]]
name = "genbank_to_ffn"
path = "tests/genbank_to_ffn.rs"

[[test]]
name = "genbank_to_gff"
path = "tests/genbank_to_gff.rs"

[[test]]
name = "msa_parser"
path = "tests/msa_parser.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.async-compression]
version = "0.4.35"
features = [
    "tokio",
    "gzip",
]

[dependencies.bio]
version = "3.0.0"

[dependencies.chrono]
version = "0.4.38"

[dependencies.clap]
version = "4.5.19"
features = ["derive"]

[dependencies.flate2]
version = "1.1.5"

[dependencies.futures]
version = "0.3.31"

[dependencies.itertools]
version = "0.14.0"

[dependencies.lazy_static]
version = "1.5"

[dependencies.paste]
version = "1.0"

[dependencies.protein-translate]
version = "0.2.0"

[dependencies.quick-xml]
version = "0.38.4"
features = [
    "async-tokio",
    "escape-html",
]

[dependencies.regex]
version = "1.5"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.145"

[dependencies.thiserror]
version = "2.0.12"

[dependencies.tokio]
version = "1.48.0"
features = ["full"]

[lints.rust]
unsafe_code = "forbid"