[[bin]]
name = "mehari"
path = "src/main.rs"
[build-dependencies.anyhow]
version = "1.0"
[build-dependencies.built]
features = ["cargo-lock", "dependency-tree", "git2", "chrono", "semver"]
version = "0.7"
[build-dependencies.pbjson-build]
version = "0.7.0"
[build-dependencies.prost-build]
version = "0.13.4"
[dependencies.actix-web]
version = "4.10"
[dependencies.annonars]
version = "0.44.0"
[dependencies.anyhow]
version = "1.0"
[dependencies.async-compression]
features = ["tokio", "gzip"]
version = "0.4"
[dependencies.bio]
version = "2.0.3"
[dependencies.biocommons-bioutils]
version = "0.1.4"
[dependencies.built]
features = ["chrono", "semver"]
version = "0.7"
[dependencies.byte-unit]
version = "5.1"
[dependencies.chrono]
version = "0.4"
[dependencies.clap]
features = ["derive"]
version = "4.5"
[dependencies.clap-verbosity-flag]
version = "3.0"
[dependencies.csv]
version = "1.3"
[dependencies.derivative]
version = "2.2"
[dependencies.derive-new]
version = "0.7.0"
[dependencies.derive_builder]
features = ["clippy"]
version = "0.20"
[dependencies.dhat]
optional = true
version = "0.3.3"
[dependencies.enumflags2]
features = ["serde"]
version = "0.7.11"
[dependencies.env_logger]
version = "0.11"
[dependencies.flate2]
version = "1.1"
[dependencies.futures]
version = "0.3"
[dependencies.hgvs]
version = "0.18.2"
[dependencies.indexmap]
features = ["serde"]
version = "2.9"
[dependencies.itertools]
version = "0.14"
[dependencies.jsonl]
version = "4.0"
[dependencies.log]
version = "0.4"
[dependencies.memmap2]
version = "0.9.5"
[dependencies.nom]
version = "8.0"
[dependencies.noodles]
features = ["async", "bgzf", "core", "vcf", "bcf", "csi", "fasta", "tabix"]
version = "0.97.0"
[dependencies.nutype]
features = ["serde"]
version = "0.6.1"
[dependencies.once_cell]
version = "1.21.3"
[dependencies.parse-display]
version = "0.10"
[dependencies.pbjson]
version = "0.7"
[dependencies.percent-encoding]
version = "2.3"
[dependencies.procfs]
version = "0.17"
[dependencies.prost]
version = "0.13.4"
[dependencies.quick_cache]
version = "0.6.12"
[dependencies.rand]
version = "0.9"
[dependencies.rayon]
version = "1.10.0"
[dependencies.rocksdb]
features = ["multi-threaded-cf"]
version = "0.23"
[dependencies.rustc-hash]
version = "2.1.0"
[dependencies.seqrepo]
features = ["cached"]
version = "0.10.2"
[dependencies.serde]
features = ["derive"]
version = "1.0"
[dependencies.serde-aux]
version = "4.6.0"
[dependencies.serde_json]
version = "1.0"
[dependencies.serde_with]
default-features = false
features = ["alloc", "macros", "indexmap_2"]
version = "3.12"
[dependencies.serde_yaml]
version = "0.9"
[dependencies.strum]
features = ["derive"]
version = "0.27"
[dependencies.tempfile]
version = "3"
[dependencies.thousands]
version = "0.2"
[dependencies.tokio]
features = ["rt-multi-thread", "macros"]
version = "1.44"
[dependencies.tracing]
features = ["log"]
version = "0.1"
[dependencies.tracing-subscriber]
version = "0.3"
[dependencies.utoipa]
features = ["actix_extras", "chrono", "indexmap", "openapi_extensions", "preserve_order", "yaml"]
version = "5.2.0"
[dependencies.utoipa-swagger-ui]
features = ["actix-web"]
version = "9.0.0"
[dependencies.uuid]
features = ["fast-rng", "serde"]
version = "1.16"
[dependencies.zstd]
version = "0.13"
[dev-dependencies.criterion]
features = ["async_tokio"]
version = "0.5.1"
[dev-dependencies.csv]
version = "1.3"
[dev-dependencies.hxdmp]
version = "0.2"
[dev-dependencies.insta]
features = ["yaml"]
version = "1.42"
[dev-dependencies.pprof]
features = ["flamegraph"]
version = "0.14.0"
[dev-dependencies.pretty_assertions]
version = "1.4"
[dev-dependencies.rstest]
version = "0.25"
[dev-dependencies.temp_testdir]
version = "0.2"
[dev-dependencies.tracing-test]
version = "0.2"
[features]
default = ["jemalloc"]
dhat-heap = ["dep:dhat"]
documentation = []
jemalloc = ["dep:tikv-jemallocator", "rocksdb/jemalloc", "annonars/jemalloc"]
[lib]
name = "mehari"
path = "src/lib.rs"
[package]
authors = ["Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = "build.rs"
description = "Variant effect prediction all in Rust"
edition = "2021"
license = "MIT"
name = "mehari"
readme = "README.md"
repository = "https://github.com/varfish-org/mehari"
rust-version = "1.75.0"
version = "0.35.0"
[package.metadata.docs.rs]
all-features = true
[profile.dev]
codegen-units = 128
debug = 2
lto = false
opt-level = 3
[profile.dev.package.insta]
opt-level = 3
[profile.dev.package.similar]
opt-level = 3
[profile.profiling]
debug = 2
inherits = "release"
[profile.release]
codegen-units = 1
debug = 0
lto = "fat"
[target.'cfg(not(target_env = "msvc"))'.dependencies.tikv-jemallocator]
optional = true
version = "0.6"