[package]
edition = "2021"
rust-version = "1.80.1"
name = "matchtigs"
version = "2.1.9"
authors = ["Sebastian Schmidt <sebastian.schmidt@helsinki.fi>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Different algorithms for computing small and minimum plain text representations of kmer sets."
homepage = "https://github.com/algbio/matchtigs"
documentation = "https://docs.rs/matchtigs"
readme = "README.md"
keywords = [
"compression",
"plain-text",
"kmer",
"genome",
"bio",
]
categories = [
"algorithms",
"compression",
"command-line-utilities",
"science",
]
license-file = "LICENSE.txt"
repository = "https://github.com/algbio/matchtigs"
[profile.release]
lto = true
debug = 2
[lib]
name = "libmatchtigs"
crate-type = [
"rlib",
"dylib",
]
path = "src/lib.rs"
[[bin]]
name = "matchtigs"
path = "src/bin.rs"
[dependencies.atomic-counter]
version = "1.0.1"
[dependencies.clap]
version = "4.5.27"
features = [
"derive",
"cargo",
]
[dependencies.crossbeam]
version = "0.8.1"
[dependencies.disjoint-sets]
version = "0.4.2"
[dependencies.flate2]
version = "1.0.35"
[dependencies.genome-graph]
version = "11.0.0"
features = ["traitgraph-algo"]
[dependencies.hashbrown]
version = "0.15.2"
[dependencies.itertools]
version = "0.14.0"
[dependencies.log]
version = "0.4.25"
[dependencies.memory-stats]
version = "1.0.0"
[dependencies.permutation]
version = "0.4.0"
[dependencies.simplelog]
version = "0.12.0"
[dependencies.traitgraph-algo]
version = "8.1.2"
features = ["hashbrown_dijkstra_node_weight_array"]