version = 3
[[package]]
name = "addr2line"
version = "0.19.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a76fd60b23679b7d19bd066031410fb7e458ccc5e958eb5c325888ce4baedc97"
dependencies = [
"gimli",
]
[[package]]
name = "adler"
version = "1.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
[[package]]
name = "ahash"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2c99f64d1e06488f620f932677e24bc6e2897582980441ae90a671415bd7ec2f"
dependencies = [
"cfg-if",
"once_cell",
"version_check",
]
[[package]]
name = "aho-corasick"
version = "1.0.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "43f6cb1bf222025340178f382c426f13757b2960e89779dfcb319c32542a5a41"
dependencies = [
"memchr",
]
[[package]]
name = "allocator-api2"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "56fc6cf8dc8c4158eed8649f9b8b0ea1518eb62b544fe9490d66fa0b349eafe9"
[[package]]
name = "anstream"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0ca84f3628370c59db74ee214b3263d58f9aadd9b4fe7e711fd87dc452b7f163"
dependencies = [
"anstyle",
"anstyle-parse",
"anstyle-query",
"anstyle-wincon",
"colorchoice",
"is-terminal",
"utf8parse",
]
[[package]]
name = "anstyle"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41ed9a86bf92ae6580e0a31281f65a1b1d867c0cc68d5346e2ae128dddfa6a7d"
[[package]]
name = "anstyle-parse"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e765fd216e48e067936442276d1d57399e37bce53c264d6fefbe298080cb57ee"
dependencies = [
"utf8parse",
]
[[package]]
name = "anstyle-query"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5ca11d4be1bab0c8bc8734a9aa7bf4ee8316d462a08c6ac5052f888fef5b494b"
dependencies = [
"windows-sys",
]
[[package]]
name = "anstyle-wincon"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "180abfa45703aebe0093f79badacc01b8fd4ea2e35118747e5811127f926e188"
dependencies = [
"anstyle",
"windows-sys",
]
[[package]]
name = "anyhow"
version = "1.0.71"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c7d0618f0e0b7e8ff11427422b64564d5fb0be1940354bfe2e0529b18a9d9b8"
[[package]]
name = "approx"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cab112f0a86d568ea0e627cc1d6be74a1e9cd55214684db5561995f6dad897c6"
dependencies = [
"num-traits",
]
[[package]]
name = "atomic-counter"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62f447d68cfa5a9ab0c1c862a703da2a65b5ed1b7ce1153c9eb0169506d56019"
[[package]]
name = "autocfg"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa"
[[package]]
name = "backtrace"
version = "0.3.67"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "233d376d6d185f2a3093e58f283f60f880315b6c60075b01f36b3b85154564ca"
dependencies = [
"addr2line",
"cc",
"cfg-if",
"libc",
"miniz_oxide 0.6.2",
"object",
"rustc-demangle",
]
[[package]]
name = "bigraph"
version = "3.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fcee2058e309fb46c712c35377e4bea4db425530209dcbbafc44ead44b712dfe"
dependencies = [
"bitvector",
"traitgraph",
"traitgraph-algo",
]
[[package]]
name = "bio"
version = "1.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b55f42d2f1632ae6453f58124d75f3f7e32ba2a265188a920ae57a3f3cf08cbe"
dependencies = [
"anyhow",
"approx",
"bio-types",
"bit-set",
"bv",
"bytecount",
"csv",
"custom_derive",
"enum-map",
"fxhash",
"getset",
"itertools",
"itertools-num",
"lazy_static",
"multimap",
"ndarray",
"newtype_derive",
"num-integer",
"num-traits",
"ordered-float",
"petgraph",
"rand",
"regex",
"serde",
"serde_derive",
"statrs",
"strum",
"strum_macros",
"thiserror",
"triple_accel",
"vec_map",
]
[[package]]
name = "bio-types"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c915bf6c578d40e1e497f8c571a4514bc89c3195cec2abb8be6dd5500405c752"
dependencies = [
"derive-new",
"lazy_static",
"regex",
"strum_macros",
"thiserror",
]
[[package]]
name = "bit-set"
version = "0.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0700ddab506f33b20a03b13996eccd309a48e5ff77d0d95926aa0210fb4e95f1"
dependencies = [
"bit-vec",
]
[[package]]
name = "bit-vec"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb"
[[package]]
name = "bitflags"
version = "1.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
[[package]]
name = "bitvec"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1bc2832c24239b0141d5674bb9174f9d68a8b5b3f2753311927c172ca46f7e9c"
dependencies = [
"funty",
"radium",
"tap",
"wyz",
]
[[package]]
name = "bitvector"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4de5fdcad0b12d843c0b535976ba5f5110ecde436161a7f3cda255674cfc28cb"
[[package]]
name = "bv"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340"
dependencies = [
"feature-probe",
"serde",
]
[[package]]
name = "bytecount"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2c676a478f63e9fa2dd5368a42f28bba0d6c560b775f38583c8bbaa7fcd67c9c"
[[package]]
name = "bytemuck"
version = "1.13.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "17febce684fd15d89027105661fec94afb475cb995fbc59d2865198446ba2eea"
[[package]]
name = "byteorder"
version = "1.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610"
[[package]]
name = "cc"
version = "1.0.79"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "50d30906286121d95be3d479533b458f87493b30a4b5f79a607db8f5d11aa91f"
[[package]]
name = "cfg-if"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
[[package]]
name = "clap"
version = "4.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "80672091db20273a15cf9fdd4e47ed43b5091ec9841bf4c6145c9dfbbcae09ed"
dependencies = [
"clap_builder",
"clap_derive",
"once_cell",
]
[[package]]
name = "clap_builder"
version = "4.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c1458a1df40e1e2afebb7ab60ce55c1fa8f431146205aa5f4887e0b111c27636"
dependencies = [
"anstream",
"anstyle",
"bitflags",
"clap_lex",
"once_cell",
"strsim",
]
[[package]]
name = "clap_derive"
version = "4.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b8cd2b2a819ad6eec39e8f1d6b53001af1e5469f8c177579cdaeb313115b825f"
dependencies = [
"heck",
"proc-macro2",
"quote",
"syn 2.0.18",
]
[[package]]
name = "clap_lex"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b"
[[package]]
name = "colorchoice"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7"
[[package]]
name = "compact-genome"
version = "1.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e1db9ae4fa1eaca78521c34cd0900972b260e36e3afb4d9cbf87ed0ef576a55d"
dependencies = [
"bitvec",
"itertools",
"lazy_static",
"ref-cast",
"traitsequence",
]
[[package]]
name = "crc32fast"
version = "1.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b540bd8bc810d3885c6ea91e2018302f68baba2129ab3e88f32389ee9370880d"
dependencies = [
"cfg-if",
]
[[package]]
name = "crossbeam"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2801af0d36612ae591caa9568261fddce32ce6e08a7275ea334a06a4ad021a2c"
dependencies = [
"cfg-if",
"crossbeam-channel",
"crossbeam-deque",
"crossbeam-epoch",
"crossbeam-queue",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-channel"
version = "0.5.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200"
dependencies = [
"cfg-if",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-deque"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ce6fd6f855243022dcecf8702fef0c297d4338e226845fe067f6341ad9fa0cef"
dependencies = [
"cfg-if",
"crossbeam-epoch",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-epoch"
version = "0.9.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ae211234986c545741a7dc064309f67ee1e5ad243d0e48335adc0484d960bcc7"
dependencies = [
"autocfg",
"cfg-if",
"crossbeam-utils",
"memoffset",
"scopeguard",
]
[[package]]
name = "crossbeam-queue"
version = "0.3.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d1cfb3ea8a53f37c40dea2c7bedcbd88bdfae54f5e2175d6ecaff1c988353add"
dependencies = [
"cfg-if",
"crossbeam-utils",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5a22b2d63d4d1dc0b7f1b6b2747dd0088008a9be28b6ddf0b1e7d335e3037294"
dependencies = [
"cfg-if",
]
[[package]]
name = "csv"
version = "1.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "626ae34994d3d8d668f4269922248239db4ae42d538b14c398b74a52208e8086"
dependencies = [
"csv-core",
"itoa",
"ryu",
"serde",
]
[[package]]
name = "csv-core"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90"
dependencies = [
"memchr",
]
[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
[[package]]
name = "derive-new"
version = "0.5.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535"
dependencies = [
"proc-macro2",
"quote",
"syn 1.0.109",
]
[[package]]
name = "disjoint-sets"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4ccbbca7d6a247007ca2535c616d4bb4a5fcad176ef0218671f96b88c52c3d34"
[[package]]
name = "either"
version = "1.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7fcaabb2fef8c910e7f4c7ce9f67a1283a1715879a7c230ca9d6d1ae31f16d91"
[[package]]
name = "enum-map"
version = "1.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e893a7ba6116821058dec84a6fb14fb2a97cd8ce5fd0f85d5a4e760ecd7329d9"
dependencies = [
"enum-map-derive",
]
[[package]]
name = "enum-map-derive"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "84278eae0af6e34ff6c1db44c11634a694aafac559ff3080e4db4e4ac35907aa"
dependencies = [
"proc-macro2",
"quote",
"syn 1.0.109",
]
[[package]]
name = "errno"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4bcfec3a70f97c962c307b2d2c56e358cf1d00b558d74262b5f929ee8cc7e73a"
dependencies = [
"errno-dragonfly",
"libc",
"windows-sys",
]
[[package]]
name = "errno-dragonfly"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "aa68f1b12764fab894d2755d2518754e71b4fd80ecfb822714a1206c2aab39bf"
dependencies = [
"cc",
"libc",
]
[[package]]
name = "error-chain"
version = "0.12.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2d2f06b9cac1506ece98fe3231e3cc9c4410ec3d5b1f24ae1c8946f0742cdefc"
dependencies = [
"backtrace",
"version_check",
]
[[package]]
name = "feature-probe"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
[[package]]
name = "fixedbitset"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80"
[[package]]
name = "flate2"
version = "1.0.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3b9429470923de8e8cbd4d2dc513535400b4b3fef0319fb5c4e1f520a7bef743"
dependencies = [
"crc32fast",
"miniz_oxide 0.7.1",
]
[[package]]
name = "funty"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c"
[[package]]
name = "fxhash"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c"
dependencies = [
"byteorder",
]
[[package]]
name = "genome-graph"
version = "6.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "278775bab4575622649800057b39fabb2ce0db885ba3af625c2885ea4e4c7581"
dependencies = [
"anyhow",
"bigraph",
"bio",
"compact-genome",
"disjoint-sets",
"error-chain",
"log",
"num-traits",
"regex",
"traitgraph-algo",
]
[[package]]
name = "getrandom"
version = "0.2.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "be4136b2a15dd319360be1c07d9933517ccf0be8f16bf62a3bee4f0d618df427"
dependencies = [
"cfg-if",
"libc",
"wasi",
]
[[package]]
name = "getset"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e45727250e75cc04ff2846a66397da8ef2b3db8e40e0cef4df67950a07621eb9"
dependencies = [
"proc-macro-error",
"proc-macro2",
"quote",
"syn 1.0.109",
]
[[package]]
name = "gimli"
version = "0.27.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6c80984affa11d98d1b88b66ac8853f143217b399d3c74116778ff8fdb4ed2e"
[[package]]
name = "hashbrown"
version = "0.12.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888"
[[package]]
name = "hashbrown"
version = "0.14.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2c6201b9ff9fd90a5a3bac2e56a830d0caa509576f0e503818ee82c181b3437a"
dependencies = [
"ahash",
"allocator-api2",
]
[[package]]
name = "heck"
version = "0.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8"
[[package]]
name = "hermit-abi"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fed44880c466736ef9a5c5b5facefb5ed0785676d0c02d612db14e54f0d84286"
[[package]]
name = "indexmap"
version = "1.9.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99"
dependencies = [
"autocfg",
"hashbrown 0.12.3",
]
[[package]]
name = "io-lifetimes"
version = "1.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "eae7b9aee968036d54dce06cebaefd919e4472e753296daccd6d344e3e2df0c2"
dependencies = [
"hermit-abi",
"libc",
"windows-sys",
]
[[package]]
name = "is-terminal"
version = "0.4.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "adcf93614601c8129ddf72e2d5633df827ba6551541c6d8c59520a371475be1f"
dependencies = [
"hermit-abi",
"io-lifetimes",
"rustix",
"windows-sys",
]
[[package]]
name = "itertools"
version = "0.10.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b0fd2260e829bddf4cb6ea802289de2f86d6a7a690192fbe91b3f46e0f2c8473"
dependencies = [
"either",
]
[[package]]
name = "itertools-num"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7"
dependencies = [
"num-traits",
]
[[package]]
name = "itoa"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "453ad9f582a441959e5f0d088b02ce04cfe8d51a8eaf077f12ac6d3e94164ca6"
[[package]]
name = "lazy_static"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
[[package]]
name = "libc"
version = "0.2.146"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f92be4933c13fd498862a9e02a3055f8a8d9c039ce33db97306fd5a6caa7f29b"
[[package]]
name = "libm"
version = "0.2.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f7012b1bbb0719e1097c47611d3898568c546d597c2e74d66f6087edd5233ff4"
[[package]]
name = "linux-raw-sys"
version = "0.3.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef53942eb7bf7ff43a617b3e2c1c4a5ecf5944a7c1bc12d7ee39bbb15e5c1519"
[[package]]
name = "log"
version = "0.4.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b06a4cde4c0f271a446782e3eff8de789548ce57dbc8eca9292c27f4a42004b4"
[[package]]
name = "matchtigs"
version = "2.1.4"
dependencies = [
"atomic-counter",
"clap",
"crossbeam",
"disjoint-sets",
"flate2",
"genome-graph",
"hashbrown 0.14.0",
"itertools",
"log",
"memory-stats",
"permutation",
"simplelog",
"traitgraph-algo",
]
[[package]]
name = "matrixmultiply"
version = "0.3.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "090126dc04f95dc0d1c1c91f61bdd474b3930ca064c1edc8a849da2c6cbe1e77"
dependencies = [
"autocfg",
"rawpointer",
]
[[package]]
name = "memchr"
version = "2.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d"
[[package]]
name = "memoffset"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5a634b1c61a95585bd15607c6ab0c4e5b226e695ff2800ba0cdccddf208c406c"
dependencies = [
"autocfg",
]
[[package]]
name = "memory-stats"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34f79cf9964c5c9545493acda1263f1912f8d2c56c8a2ffee2606cb960acaacc"
dependencies = [
"libc",
"winapi",
]
[[package]]
name = "miniz_oxide"
version = "0.6.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b275950c28b37e794e8c55d88aeb5e139d0ce23fdbbeda68f8d7174abdf9e8fa"
dependencies = [
"adler",
]
[[package]]
name = "miniz_oxide"
version = "0.7.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e7810e0be55b428ada41041c41f32c9f1a42817901b4ccf45fa3d4b6561e74c7"
dependencies = [
"adler",
]
[[package]]
name = "multimap"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e5ce46fe64a9d73be07dcbe690a38ce1b293be448fd8ce1e6c1b8062c9f72c6a"
dependencies = [
"serde",
]
[[package]]
name = "nalgebra"
version = "0.29.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d506eb7e08d6329505faa8a3a00a5dcc6de9f76e0c77e4b75763ae3c770831ff"
dependencies = [
"approx",
"matrixmultiply",
"nalgebra-macros",
"num-complex",
"num-rational",
"num-traits",
"rand",
"rand_distr",
"simba",
"typenum",
]
[[package]]
name = "nalgebra-macros"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "01fcc0b8149b4632adc89ac3b7b31a12fb6099a0317a4eb2ebff574ef7de7218"
dependencies = [
"proc-macro2",
"quote",
"syn 1.0.109",
]
[[package]]
name = "ndarray"
version = "0.15.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "adb12d4e967ec485a5f71c6311fe28158e9d6f4bc4a447b474184d0f91a8fa32"
dependencies = [
"matrixmultiply",
"num-complex",
"num-integer",
"num-traits",
"rawpointer",
]
[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
"rustc_version",
]
[[package]]
name = "num-complex"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "02e0d21255c828d6f128a1e41534206671e8c3ea0c62f32291e808dc82cff17d"
dependencies = [
"num-traits",
]
[[package]]
name = "num-integer"
version = "0.1.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "225d3389fb3509a24c93f5c29eb6bde2586b98d9f016636dff58d7c6f7569cd9"
dependencies = [
"autocfg",
"num-traits",
]
[[package]]
name = "num-rational"
version = "0.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0638a1c9d0a3c0914158145bc76cff373a75a627e6ecbfb71cbe6f453a5a19b0"
dependencies = [
"autocfg",
"num-integer",
"num-traits",
]
[[package]]
name = "num-traits"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "578ede34cf02f8924ab9447f50c28075b4d3e5b269972345e7e0372b38c6cdcd"
dependencies = [
"autocfg",
"libm",
]
[[package]]
name = "num_threads"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2819ce041d2ee131036f4fc9d6ae7ae125a3a40e97ba64d04fe799ad9dabbb44"
dependencies = [
"libc",
]
[[package]]
name = "object"
version = "0.30.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "03b4680b86d9cfafba8fc491dc9b6df26b68cf40e9e6cd73909194759a63c385"
dependencies = [
"memchr",
]
[[package]]
name = "once_cell"
version = "1.18.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dd8b5dd2ae5ed71462c540258bedcb51965123ad7e7ccf4b9a8cafaa4a63576d"
[[package]]
name = "ordered-float"
version = "3.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2fc2dbde8f8a79f2102cc474ceb0ad68e3b80b85289ea62389b60e66777e4213"
dependencies = [
"num-traits",
]
[[package]]
name = "paste"
version = "1.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9f746c4065a8fa3fe23974dd82f15431cc8d40779821001404d10d2e79ca7d79"
[[package]]
name = "permutation"
version = "0.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "df202b0b0f5b8e389955afd5f27b007b00fb948162953f1db9c70d2c7e3157d7"
[[package]]
name = "petgraph"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4dd7d28ee937e54fe3080c91faa1c3a46c06de6252988a7f4592ba2310ef22a4"
dependencies = [
"fixedbitset",
"indexmap",
]
[[package]]
name = "ppv-lite86"
version = "0.2.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de"
[[package]]
name = "proc-macro-error"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
dependencies = [
"proc-macro-error-attr",
"proc-macro2",
"quote",
"syn 1.0.109",
"version_check",
]
[[package]]
name = "proc-macro-error-attr"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
dependencies = [
"proc-macro2",
"quote",
"version_check",
]
[[package]]
name = "proc-macro2"
version = "1.0.60"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dec2b086b7a862cf4de201096214fa870344cf922b2b30c167badb3af3195406"
dependencies = [
"unicode-ident",
]
[[package]]
name = "quote"
version = "1.0.28"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1b9ab9c7eadfd8df19006f1cf1a4aed13540ed5cbc047010ece5826e10825488"
dependencies = [
"proc-macro2",
]
[[package]]
name = "radium"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09"
[[package]]
name = "rand"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404"
dependencies = [
"libc",
"rand_chacha",
"rand_core",
]
[[package]]
name = "rand_chacha"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6c10a63a0fa32252be49d21e7709d4d4baf8d231c2dbce1eaa8141b9b127d88"
dependencies = [
"ppv-lite86",
"rand_core",
]
[[package]]
name = "rand_core"
version = "0.6.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c"
dependencies = [
"getrandom",
]
[[package]]
name = "rand_distr"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32cb0b9bc82b0a0876c2dd994a7e7a2683d3e7390ca40e6886785ef0c7e3ee31"
dependencies = [
"num-traits",
"rand",
]
[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
[[package]]
name = "ref-cast"
version = "1.0.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f43faa91b1c8b36841ee70e97188a869d37ae21759da6846d4be66de5bf7b12c"
dependencies = [
"ref-cast-impl",
]
[[package]]
name = "ref-cast-impl"
version = "1.0.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8d2275aab483050ab2a7364c1a46604865ee7d6906684e08db0f090acf74f9e7"
dependencies = [
"proc-macro2",
"quote",
"syn 2.0.18",
]
[[package]]
name = "regex"
version = "1.8.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d0ab3ca65655bb1e41f2a8c8cd662eb4fb035e67c3f78da1d61dffe89d07300f"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
]
[[package]]
name = "regex-syntax"
version = "0.7.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "436b050e76ed2903236f032a59761c1eb99e1b0aead2c257922771dab1fc8c78"
[[package]]
name = "rustc-demangle"
version = "0.1.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d626bb9dae77e28219937af045c257c28bfd3f69333c512553507f5f9798cb76"
[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
"semver",
]
[[package]]
name = "rustix"
version = "0.37.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b96e891d04aa506a6d1f318d2771bcb1c7dfda84e126660ace067c9b474bb2c0"
dependencies = [
"bitflags",
"errno",
"io-lifetimes",
"libc",
"linux-raw-sys",
"windows-sys",
]
[[package]]
name = "rustversion"
version = "1.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4f3208ce4d8448b3f3e7d168a73f5e0c43a61e32930de3bceeccedb388b6bf06"
[[package]]
name = "ryu"
version = "1.0.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f91339c0467de62360649f8d3e185ca8de4224ff281f66000de5eb2a77a79041"
[[package]]
name = "safe_arch"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62a7484307bd40f8f7ccbacccac730108f2cae119a3b11c74485b48aa9ea650f"
dependencies = [
"bytemuck",
]
[[package]]
name = "scopeguard"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd"
[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
[[package]]
name = "serde"
version = "1.0.164"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9e8c8cf938e98f769bc164923b06dce91cea1751522f46f8466461af04c9027d"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_derive"
version = "1.0.164"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d9735b638ccc51c28bf6914d90a2e9725b377144fc612c49a611fddd1b631d68"
dependencies = [
"proc-macro2",
"quote",
"syn 2.0.18",
]
[[package]]
name = "simba"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f0b7840f121a46d63066ee7a99fc81dcabbc6105e437cae43528cea199b5a05f"
dependencies = [
"approx",
"num-complex",
"num-traits",
"paste",
"wide",
]
[[package]]
name = "simplelog"
version = "0.12.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "acee08041c5de3d5048c8b3f6f13fafb3026b24ba43c6a695a0c76179b844369"
dependencies = [
"log",
"termcolor",
"time",
]
[[package]]
name = "statrs"
version = "0.16.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2d08e5e1748192713cc281da8b16924fb46be7b0c2431854eadc785823e5696e"
dependencies = [
"approx",
"lazy_static",
"nalgebra",
"num-traits",
"rand",
]
[[package]]
name = "strsim"
version = "0.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"
[[package]]
name = "strum"
version = "0.24.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "063e6045c0e62079840579a7e47a355ae92f60eb74daaf156fb1e84ba164e63f"
[[package]]
name = "strum_macros"
version = "0.24.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e385be0d24f186b4ce2f9982191e7101bb737312ad61c1f2f984f34bcf85d59"
dependencies = [
"heck",
"proc-macro2",
"quote",
"rustversion",
"syn 1.0.109",
]
[[package]]
name = "syn"
version = "1.0.109"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "syn"
version = "2.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "32d41677bcbe24c20c52e7c70b0d8db04134c5d1066bf98662e2871ad200ea3e"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "tap"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369"
[[package]]
name = "termcolor"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bab24d30b911b2376f3a13cc2cd443142f0c81dda04c118693e35b3835757755"
dependencies = [
"winapi-util",
]
[[package]]
name = "thiserror"
version = "1.0.40"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "978c9a314bd8dc99be594bc3c175faaa9794be04a5a5e153caba6915336cebac"
dependencies = [
"thiserror-impl",
]
[[package]]
name = "thiserror-impl"
version = "1.0.40"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f9456a42c5b0d803c8cd86e73dd7cc9edd429499f37a3550d286d5e86720569f"
dependencies = [
"proc-macro2",
"quote",
"syn 2.0.18",
]
[[package]]
name = "time"
version = "0.3.22"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ea9e1b3cf1243ae005d9e74085d4d542f3125458f3a81af210d901dcd7411efd"
dependencies = [
"itoa",
"libc",
"num_threads",
"serde",
"time-core",
"time-macros",
]
[[package]]
name = "time-core"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7300fbefb4dadc1af235a9cef3737cea692a9d97e1b9cbcd4ebdae6f8868e6fb"
[[package]]
name = "time-macros"
version = "0.2.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "372950940a5f07bf38dbe211d7283c9e6d7327df53794992d293e534c733d09b"
dependencies = [
"time-core",
]
[[package]]
name = "traitgraph"
version = "3.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1ecbd1001637cb1bac78513e81023901f83c5291ac206667752f72c205525086"
dependencies = [
"bitvector",
"num-traits",
"petgraph",
"traitsequence",
]
[[package]]
name = "traitgraph-algo"
version = "6.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c4d16d8f25edb80778bff6387d616f392cd3493059a2811d3cc9001d13c17260"
dependencies = [
"hashbrown 0.14.0",
"rand",
"traitgraph",
]
[[package]]
name = "traitsequence"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e43e9c5a3771f5149c0290c829e87524803a89e466c5d170d0b14face79b299d"
[[package]]
name = "triple_accel"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63"
[[package]]
name = "typenum"
version = "1.16.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "497961ef93d974e23eb6f433eb5fe1b7930b659f06d12dec6fc44a8f554c0bba"
[[package]]
name = "unicode-ident"
version = "1.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b15811caf2415fb889178633e7724bad2509101cde276048e013b9def5e51fa0"
[[package]]
name = "utf8parse"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a"
[[package]]
name = "vec_map"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191"
dependencies = [
"serde",
]
[[package]]
name = "version_check"
version = "0.9.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f"
[[package]]
name = "wasi"
version = "0.11.0+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
[[package]]
name = "wide"
version = "0.7.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "40018623e2dba2602a9790faba8d33f2ebdebf4b86561b83928db735f8784728"
dependencies = [
"bytemuck",
"safe_arch",
]
[[package]]
name = "winapi"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419"
dependencies = [
"winapi-i686-pc-windows-gnu",
"winapi-x86_64-pc-windows-gnu",
]
[[package]]
name = "winapi-i686-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
[[package]]
name = "winapi-util"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178"
dependencies = [
"winapi",
]
[[package]]
name = "winapi-x86_64-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
[[package]]
name = "windows-sys"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9"
dependencies = [
"windows-targets",
]
[[package]]
name = "windows-targets"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7b1eb6f0cd7c80c79759c929114ef071b87354ce476d9d94271031c0497adfd5"
dependencies = [
"windows_aarch64_gnullvm",
"windows_aarch64_msvc",
"windows_i686_gnu",
"windows_i686_msvc",
"windows_x86_64_gnu",
"windows_x86_64_gnullvm",
"windows_x86_64_msvc",
]
[[package]]
name = "windows_aarch64_gnullvm"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc"
[[package]]
name = "windows_aarch64_msvc"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3"
[[package]]
name = "windows_i686_gnu"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241"
[[package]]
name = "windows_i686_msvc"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00"
[[package]]
name = "windows_x86_64_gnu"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1"
[[package]]
name = "windows_x86_64_gnullvm"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953"
[[package]]
name = "windows_x86_64_msvc"
version = "0.48.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a"
[[package]]
name = "wyz"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed"
dependencies = [
"tap",
]