limma-rust 0.1.0

Pure-Rust port of the Bioconductor limma differential-expression package
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.85"
name = "limma-rust"
version = "0.1.0"
build = false
exclude = [
    "/reference",
    "/benchmarks",
    "/scratch",
    "/examples",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Pure-Rust port of the Bioconductor limma differential-expression package"
readme = "README.md"
keywords = [
    "bioinformatics",
    "statistics",
    "limma",
    "genomics",
    "microarray",
]
categories = [
    "science",
    "mathematics",
    "command-line-utilities",
]
license = "GPL-3.0-or-later"
repository = "https://github.com/sinmojito/limma-rust"

[features]
cli = [
    "dep:clap",
    "dep:csv",
]
default = [
    "parallel",
    "faer",
    "cli",
]
faer = ["dep:faer"]
parallel = ["dep:rayon"]

[lib]
name = "limma"
path = "src/lib.rs"

[[bin]]
name = "limma"
path = "src/bin/limma.rs"
required-features = ["cli"]

[[test]]
name = "cli"
path = "tests/cli.rs"

[dependencies.anyhow]
version = "1"

[dependencies.clap]
version = "4"
features = ["derive"]
optional = true

[dependencies.csv]
version = "1.3"
optional = true

[dependencies.faer]
version = "0.24"
features = [
    "std",
    "linalg",
]
optional = true
default-features = false

[dependencies.ndarray]
version = "0.16"

[dependencies.rayon]
version = "1"
optional = true

[dependencies.statrs]
version = "0.18"

[profile.release]
opt-level = 3
lto = "thin"
codegen-units = 1