API Reference
==============
.. currentmodule:: lightmotif
.. automodule:: lightmotif
Functions
---------
.. toctree::
:maxdepth: 1
:hidden:
:caption: Functions
functions/create
functions/stripe
functions/scan
functions/load
.. autosummary::
:nosignatures:
lightmotif.create
lightmotif.stripe
lightmotif.scan
lightmotif.load
Sequence
--------
.. toctree::
:maxdepth: 1
:hidden:
:caption: Sequence
encoded
striped
.. autosummary::
:nosignatures:
lightmotif.EncodedSequence
lightmotif.StripedSequence
Matrices
--------
.. toctree::
:maxdepth: 1
:hidden:
:caption: Matrices
count
weight
scoring
.. autosummary::
:nosignatures:
lightmotif.CountMatrix
lightmotif.WeightMatrix
lightmotif.ScoringMatrix
Motif
-----
.. toctree::
:maxdepth: 1
:hidden:
:caption: Motif
motif/base
motif/transfac
motif/jaspar
motif/uniprobe
.. autosummary::
:nosignatures:
lightmotif.Motif
lightmotif.TransfacMotif
lightmotif.JasparMotif
lightmotif.UniprobeMotif
lightmotif.MemeMotif
Scores
------
.. toctree::
:maxdepth: 1
:hidden:
:caption: Scores
scores
.. autosummary::
:nosignatures:
lightmotif.StripedScores
Scanner
-------
.. toctree::
:maxdepth: 1
:hidden:
:caption: Scanner
scanner
.. autosummary::
:nosignatures:
lightmotif.Scanner
lightmotif.Hit
Loader
------
.. toctree::
:maxdepth: 1
:hidden:
:caption: Loader
loader
.. autosummary::
:nosignatures:
lightmotif.Loader