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/*
* The MIT License
*
* Wavefront Alignment Algorithms
* Copyright (c) 2017 by Santiago Marco-Sola <santiagomsola@gmail.com>
*
* This file is part of Wavefront Alignment Algorithms.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
* PROJECT: Wavefront Alignment Algorithms
* AUTHOR(S): Santiago Marco-Sola <santiagomsola@gmail.com>
* DESCRIPTION: Wavefront alignment module for plot
*/
#ifndef WAVEFRONT_PLOT_H_
#define WAVEFRONT_PLOT_H_
#include "utils/heatmap.h"
#include "alignment/score_matrix.h"
#include "wavefront/wavefront_penalties.h"
// Wavefront ahead definition
typedef struct _wavefront_aligner_t wavefront_aligner_t;
/*
* Wavefront Display
*/
typedef struct {
bool enabled; // Is plotting enabled
int resolution_points; // Total resolution points
int align_level; // Level of recursion to plot (-1 == final)
} wavefront_plot_attr_t;
typedef struct {
// Configuration
wavefront_plot_attr_t attributes;
distance_metric_t distance_metric;
int min_v;
int max_v;
int min_h;
int max_h;
// Wavefront Heatmaps
heatmap_t* m_heatmap;
heatmap_t* i1_heatmap;
heatmap_t* d1_heatmap;
heatmap_t* i2_heatmap;
heatmap_t* d2_heatmap;
heatmap_t* behavior_heatmap;
} wavefront_plot_t;
/*
* Setup
*/
wavefront_plot_t* wavefront_plot_new(
const distance_metric_t distance_metric,
const int pattern_length,
const int text_length,
wavefront_plot_attr_t* const attributes);
void wavefront_plot_resize(
wavefront_plot_t* const wf_plot,
const int pattern_length,
const int text_length);
void wavefront_plot_delete(
wavefront_plot_t* const wf_plot);
/*
* Plot record state
*/
void wavefront_plot(
wavefront_aligner_t* const wf_aligner,
const int score,
const int align_level);
/*
* Display/Dump
*/
void wavefront_plot_print(
FILE* const stream,
wavefront_aligner_t* const wf_aligner);
#endif /* WAVEFRONT_PLOT_H_ */