libradicl 0.14.2

support library for alevin-fry
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "libradicl"
version = "0.14.2"
authors = [
    "Avi Srivastava <avi.srivastava@nyu.edu>",
    "Hirak Sarkar <hirak_sarkar@hms.harvard.edu>",
    "Dongze He <dhe17@umd.edu>",
    "Mohsen Zakeri <mzakeri@cs.umd.edu>",
    "Noor Pratab Singh <npsingh@umd.edu>",
    "Rob Patro <rob@cs.umd.edu>",
]
build = false
include = [
    "src/*.rs",
    "examples/*.rs",
    "/Cargo.toml",
    "/README.md",
    "/LICENSE",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "support library for alevin-fry"
homepage = "https://github.com/COMBINE-lab/libradicl"
documentation = "https://docs.rs/libradicl"
readme = "README.md"
keywords = [
    "single-cell",
    "preprocessing",
    "RNA-seq",
    "ATAC-seq",
    "single-nucleus",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "BSD-3-Clause"
repository = "https://github.com/COMBINE-lab/libradicl"

[features]
default = []
zstd = ["dep:zstd"]

[lib]
name = "libradicl"
path = "src/lib.rs"

[[example]]
name = "read_chunk_bulk"
path = "examples/read_chunk_bulk.rs"

[[example]]
name = "read_chunk_generic"
path = "examples/read_chunk_generic.rs"

[[example]]
name = "read_chunk_single_cell"
path = "examples/read_chunk_single_cell.rs"

[[example]]
name = "read_chunk_single_cell_atac"
path = "examples/read_chunk_single_cell_atac.rs"

[[example]]
name = "read_chunk_single_cell_long_read"
path = "examples/read_chunk_single_cell_long_read.rs"

[[example]]
name = "read_chunk_single_cell_parallel"
path = "examples/read_chunk_single_cell_parallel.rs"

[[example]]
name = "read_header"
path = "examples/read_header.rs"

[dependencies.ahash]
version = "0.8.12"

[dependencies.anyhow]
version = "1.0.102"

[dependencies.bincode]
version = "1.3.3"

[dependencies.bio-types]
version = "1.0.4"

[dependencies.bytemuck]
version = "1.25.0"
features = [
    "aarch64_simd",
    "extern_crate_alloc",
]

[dependencies.crossbeam-queue]
version = "0.3.12"

[dependencies.dashmap]
version = "^6.1.0"

[dependencies.derivative]
version = "2.2.0"

[dependencies.itertools]
version = "0.14.0"

[dependencies.libradicl-macros]
version = "0.14.2"

[dependencies.lz4_flex]
version = "0.13"

[dependencies.noodles]
version = "0.111.0"
features = [
    "bam",
    "sam",
]

[dependencies.num]
version = "0.4.3"

[dependencies.scroll]
version = "0.13.0"

[dependencies.serde]
version = "1.0.228"
features = ["derive"]

[dependencies.smallvec]
version = "1.15.1"

[dependencies.snap]
version = "1"

[dependencies.zstd]
version = "0.13"
optional = true

[dev-dependencies.indicatif]
version = "0.18.4"

[dev-dependencies.needletail]
version = "0.6.3"