liblrge 0.1.0

Genome size estimation from long read overlaps
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79

[dependencies.bzip2]
optional = true
version = "0.4.4"

[dependencies.crossbeam-channel]
version = "0.5.13"

[dependencies.csv]
version = "1.3.1"

[dependencies.flate2]
optional = true
package = "flate2"
version = "1.0.34"

[dependencies.libc]
version = "0.2.164"

[dependencies.liblzma]
optional = true
package = "liblzma"
version = "0.3.5"

[dependencies.log]
version = "0.4.22"

[dependencies.minimap2-sys]
version = "0.1.19"

[dependencies.needletail]
default-features = false
version = "0.6.0"

[dependencies.rand]
version = "0.8.5"

[dependencies.rayon]
version = "1.10.0"

[dependencies.serde]
features = ["derive"]
version = "1.0.215"

[dependencies.zstd]
optional = true
version = "0.13.2"

[dev-dependencies.env_logger]
version = "0.11.5"

[features]
compression = ["gzip", "zstd", "bzip2", "xz"]
default = ["compression"]
gzip = ["flate2"]
xz = ["liblzma"]

[lib]
name = "liblrge"
path = "src/lib.rs"

[package]
authors = ["Michael Hall <michael@mbh.sh>"]
autobenches = false
autobins = false
autoexamples = false
autotests = false
build = false
description = "Genome size estimation from long read overlaps"
documentation = "https://docs.rs/liblrge"
edition = "2021"
exclude = ["paper/*"]
homepage = "https://github.com/mbhall88/lrge"
keywords = ["bioinformatics", "long-reads", "overlaps", "estimation", "genome-size"]
license-file = "LICENSE"
name = "liblrge"
readme = "README.md"
repository = "https://github.com/mbhall88/lrge"
rust-version = "1.74.1"
version = "0.1.0"