lib_tsalign 0.8.1

A sequence-to-sequence aligner that accounts for template switches
Documentation
# This file is automatically @generated by Cargo.
# It is not intended for manual editing.
version = 4

[[package]]
name = "autocfg"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26"

[[package]]
name = "binary-heap-plus"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e4551d8382e911ecc0d0f0ffb602777988669be09447d536ff4388d1def11296"
dependencies = [
 "compare",
]

[[package]]
name = "bitvec"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1bc2832c24239b0141d5674bb9174f9d68a8b5b3f2753311927c172ca46f7e9c"
dependencies = [
 "funty",
 "radium",
 "tap",
 "wyz",
]

[[package]]
name = "compact-genome"
version = "12.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "09be24ff1271c2659ea6fd6c5c898d1bf65e4796ee9897519f714efa220e94ee"
dependencies = [
 "bitvec",
 "itertools",
 "lazy_static",
 "ref-cast",
 "thiserror",
 "traitsequence",
]

[[package]]
name = "compare"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "120133d4db2ec47efe2e26502ee984747630c67f51974fca0b6c1340cf2368d3"

[[package]]
name = "deterministic_default_hasher"
version = "0.7.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62f9c573663e16f877b0fa9cd6dfbbf3c9de9d219ff0b7c3c9492abcdbf05b38"

[[package]]
name = "either"
version = "1.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60b1af1c220855b6ceac025d3f6ecdd2b7c4894bfe9cd9bda4fbb4bc7c0d4cf0"

[[package]]
name = "extend_map"
version = "0.7.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3c2127d0bd3d0c18cfe20604867bf7141e8d13df2461cbece466dab7670e5b62"

[[package]]
name = "funty"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c"

[[package]]
name = "generic_a_star"
version = "0.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2014d9b823f230e4bc5642ed7918d69bc1e45799b86fc9724e7fda7d32bf77fe"
dependencies = [
 "binary-heap-plus",
 "deterministic_default_hasher",
 "num-traits",
 "serde",
]

[[package]]
name = "itertools"
version = "0.14.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b192c782037fadd9cfa75548310488aabdbf3d2da73885b31bd0abd03351285"
dependencies = [
 "either",
]

[[package]]
name = "lazy_static"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"

[[package]]
name = "lib_tsalign"
version = "0.8.1"
dependencies = [
 "binary-heap-plus",
 "compact-genome",
 "deterministic_default_hasher",
 "extend_map",
 "generic_a_star",
 "log",
 "ndarray",
 "noisy_float",
 "nom",
 "num-traits",
 "seed_chain",
 "serde",
 "thiserror",
 "traitsequence",
]

[[package]]
name = "log"
version = "0.4.25"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "04cbf5b083de1c7e0222a7a51dbfdba1cbe1c6ab0b15e29fff3f6c077fd9cd9f"

[[package]]
name = "matrixmultiply"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9380b911e3e96d10c1f415da0876389aaf1b56759054eeb0de7df940c456ba1a"
dependencies = [
 "autocfg",
 "rawpointer",
]

[[package]]
name = "memchr"
version = "2.7.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3"

[[package]]
name = "minimal-lexical"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a"

[[package]]
name = "ndarray"
version = "0.16.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "882ed72dce9365842bf196bdeedf5055305f11fc8c03dee7bb0194a6cad34841"
dependencies = [
 "matrixmultiply",
 "num-complex",
 "num-integer",
 "num-traits",
 "portable-atomic",
 "portable-atomic-util",
 "rawpointer",
 "serde",
]

[[package]]
name = "noisy_float"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "978fe6e6ebc0bf53de533cd456ca2d9de13de13856eda1518a285d7705a213af"
dependencies = [
 "num-traits",
 "serde",
]

[[package]]
name = "nom"
version = "7.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d273983c5a657a70a3e8f2a01329822f3b8c8172b73826411a55751e404a0a4a"
dependencies = [
 "memchr",
 "minimal-lexical",
]

[[package]]
name = "num-complex"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73f88a1307638156682bada9d7604135552957b7818057dcef22705b4d509495"
dependencies = [
 "num-traits",
]

[[package]]
name = "num-integer"
version = "0.1.46"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7969661fd2958a5cb096e56c8e1ad0444ac2bbcd0061bd28660485a44879858f"
dependencies = [
 "num-traits",
]

[[package]]
name = "num-traits"
version = "0.2.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841"
dependencies = [
 "autocfg",
]

[[package]]
name = "portable-atomic"
version = "1.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "280dc24453071f1b63954171985a0b0d30058d287960968b9b2aca264c8d4ee6"

[[package]]
name = "portable-atomic-util"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507"
dependencies = [
 "portable-atomic",
]

[[package]]
name = "proc-macro2"
version = "1.0.93"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60946a68e5f9d28b0dc1c21bb8a97ee7d018a8b322fa57838ba31cc878e22d99"
dependencies = [
 "unicode-ident",
]

[[package]]
name = "quote"
version = "1.0.38"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0e4dccaaaf89514f546c693ddc140f729f958c247918a13380cccc6078391acc"
dependencies = [
 "proc-macro2",
]

[[package]]
name = "radium"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09"

[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"

[[package]]
name = "ref-cast"
version = "1.0.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ccf0a6f84d5f1d581da8b41b47ec8600871962f2a528115b542b362d4b744931"
dependencies = [
 "ref-cast-impl",
]

[[package]]
name = "ref-cast-impl"
version = "1.0.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bcc303e793d3734489387d205e9b186fac9c6cfacedd98cbb2e8a5943595f3e6"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "seed_chain"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b59c30b4e1a25703e576d4129e1d248a81ce7da85c7a5107254a20548a16095b"
dependencies = [
 "compact-genome",
 "generic_a_star",
 "log",
]

[[package]]
name = "serde"
version = "1.0.217"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "02fc4265df13d6fa1d00ecff087228cc0a2b5f3c0e87e258d8b94a156e984c70"
dependencies = [
 "serde_derive",
]

[[package]]
name = "serde_derive"
version = "1.0.217"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5a9bf7cf98d04a2b28aead066b7496853d4779c9cc183c440dbac457641e19a0"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "syn"
version = "2.0.96"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d5d0adab1ae378d7f53bdebc67a39f1f151407ef230f0ce2883572f5d8985c80"
dependencies = [
 "proc-macro2",
 "quote",
 "unicode-ident",
]

[[package]]
name = "tap"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369"

[[package]]
name = "thiserror"
version = "2.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d452f284b73e6d76dd36758a0c8684b1d5be31f92b89d07fd5822175732206fc"
dependencies = [
 "thiserror-impl",
]

[[package]]
name = "thiserror-impl"
version = "2.0.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "26afc1baea8a989337eeb52b6e72a039780ce45c3edfcc9c5b9d112feeb173c2"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "traitsequence"
version = "3.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "eccc87c72a0ca5aec58d3f762b496c87c6500884511fcf878942dd8bed63cc69"

[[package]]
name = "unicode-ident"
version = "1.0.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "adb9e6ca4f869e1180728b7950e35922a7fc6397f7b641499e8f3ef06e50dc83"

[[package]]
name = "wyz"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed"
dependencies = [
 "tap",
]