lib_tsalign 0.14.4

A sequence-to-sequence aligner that accounts for template switches
Documentation
# This file is automatically @generated by Cargo.
# It is not intended for manual editing.
version = 4

[[package]]
name = "autocfg"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26"

[[package]]
name = "binary-heap-plus"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e4551d8382e911ecc0d0f0ffb602777988669be09447d536ff4388d1def11296"
dependencies = [
 "compare",
]

[[package]]
name = "bitvec"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1bc2832c24239b0141d5674bb9174f9d68a8b5b3f2753311927c172ca46f7e9c"
dependencies = [
 "funty",
 "radium",
 "tap",
 "wyz",
]

[[package]]
name = "compact-genome"
version = "12.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1f512b52ff4bfc23a1544c203b11c1fa6ae30edc9bde2e58806ff63ad8a4987d"
dependencies = [
 "bitvec",
 "itertools",
 "lazy_static",
 "ref-cast",
 "thiserror",
 "traitsequence",
]

[[package]]
name = "compare"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "120133d4db2ec47efe2e26502ee984747630c67f51974fca0b6c1340cf2368d3"

[[package]]
name = "deterministic_default_hasher"
version = "0.14.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ae65f7e8e3580cb22a297790831a22567a52ddcf8a5367e70991512ec1d01716"

[[package]]
name = "either"
version = "1.15.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"

[[package]]
name = "extend_map"
version = "0.14.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "06de5c8c44e2cbb75a9f774649a260445586d7be8d4cf24256d4505aa2f88952"

[[package]]
name = "funty"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c"

[[package]]
name = "generic_a_star"
version = "0.14.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d640c4c4db3738d7cab90edb53721704daaa6ab43a94c13b144277f91dd05f4a"
dependencies = [
 "binary-heap-plus",
 "deterministic_default_hasher",
 "num-traits",
 "serde",
]

[[package]]
name = "itertools"
version = "0.14.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b192c782037fadd9cfa75548310488aabdbf3d2da73885b31bd0abd03351285"
dependencies = [
 "either",
]

[[package]]
name = "lazy_static"
version = "1.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"

[[package]]
name = "lib_tsalign"
version = "0.14.4"
dependencies = [
 "binary-heap-plus",
 "compact-genome",
 "deterministic_default_hasher",
 "extend_map",
 "generic_a_star",
 "log",
 "ndarray",
 "noisy_float",
 "nom",
 "num-traits",
 "seed_chain",
 "serde",
 "thiserror",
 "traitsequence",
]

[[package]]
name = "log"
version = "0.4.27"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94"

[[package]]
name = "matrixmultiply"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9380b911e3e96d10c1f415da0876389aaf1b56759054eeb0de7df940c456ba1a"
dependencies = [
 "autocfg",
 "rawpointer",
]

[[package]]
name = "memchr"
version = "2.7.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3"

[[package]]
name = "ndarray"
version = "0.16.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "882ed72dce9365842bf196bdeedf5055305f11fc8c03dee7bb0194a6cad34841"
dependencies = [
 "matrixmultiply",
 "num-complex",
 "num-integer",
 "num-traits",
 "portable-atomic",
 "portable-atomic-util",
 "rawpointer",
 "serde",
]

[[package]]
name = "noisy_float"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "978fe6e6ebc0bf53de533cd456ca2d9de13de13856eda1518a285d7705a213af"
dependencies = [
 "num-traits",
 "serde",
]

[[package]]
name = "nom"
version = "8.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "df9761775871bdef83bee530e60050f7e54b1105350d6884eb0fb4f46c2f9405"
dependencies = [
 "memchr",
]

[[package]]
name = "num-complex"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73f88a1307638156682bada9d7604135552957b7818057dcef22705b4d509495"
dependencies = [
 "num-traits",
]

[[package]]
name = "num-integer"
version = "0.1.46"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7969661fd2958a5cb096e56c8e1ad0444ac2bbcd0061bd28660485a44879858f"
dependencies = [
 "num-traits",
]

[[package]]
name = "num-traits"
version = "0.2.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "071dfc062690e90b734c0b2273ce72ad0ffa95f0c74596bc250dcfd960262841"
dependencies = [
 "autocfg",
]

[[package]]
name = "portable-atomic"
version = "1.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "350e9b48cbc6b0e028b0473b114454c6316e57336ee184ceab6e53f72c178b3e"

[[package]]
name = "portable-atomic-util"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507"
dependencies = [
 "portable-atomic",
]

[[package]]
name = "proc-macro2"
version = "1.0.94"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a31971752e70b8b2686d7e46ec17fb38dad4051d94024c88df49b667caea9c84"
dependencies = [
 "unicode-ident",
]

[[package]]
name = "quote"
version = "1.0.40"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d"
dependencies = [
 "proc-macro2",
]

[[package]]
name = "radium"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dc33ff2d4973d518d823d61aa239014831e521c75da58e3df4840d3f47749d09"

[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"

[[package]]
name = "ref-cast"
version = "1.0.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4a0ae411dbe946a674d89546582cea4ba2bb8defac896622d6496f14c23ba5cf"
dependencies = [
 "ref-cast-impl",
]

[[package]]
name = "ref-cast-impl"
version = "1.0.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1165225c21bff1f3bbce98f5a1f889949bc902d3575308cc7b0de30b4f6d27c7"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "seed_chain"
version = "0.14.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0bf145df1983d454b369bd7f9e62dff3bfe71e25e1fdbada7ef828984379dbae"
dependencies = [
 "compact-genome",
 "generic_a_star",
 "log",
 "num-traits",
]

[[package]]
name = "serde"
version = "1.0.219"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6"
dependencies = [
 "serde_derive",
]

[[package]]
name = "serde_derive"
version = "1.0.219"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "syn"
version = "2.0.100"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b09a44accad81e1ba1cd74a32461ba89dee89095ba17b32f5d03683b1b1fc2a0"
dependencies = [
 "proc-macro2",
 "quote",
 "unicode-ident",
]

[[package]]
name = "tap"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "55937e1799185b12863d447f42597ed69d9928686b8d88a1df17376a097d8369"

[[package]]
name = "thiserror"
version = "2.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "567b8a2dae586314f7be2a752ec7474332959c6460e02bde30d702a66d488708"
dependencies = [
 "thiserror-impl",
]

[[package]]
name = "thiserror-impl"
version = "2.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7f7cf42b4507d8ea322120659672cf1b9dbb93f8f2d4ecfd6e51350ff5b17a1d"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "traitsequence"
version = "8.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b939c825d0c4295ac520f7b479927c1e5b458c9107a9d6f5ba65bc867bb93a5"

[[package]]
name = "unicode-ident"
version = "1.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512"

[[package]]
name = "wyz"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05f360fc0b24296329c78fda852a1e9ae82de9cf7b27dae4b7f62f118f77b9ed"
dependencies = [
 "tap",
]