lean-ctx 3.8.10

//! Property Graph Engine — SQLite-backed code knowledge graph.
//!
//! Stores nodes (File, Symbol, Module) and edges (imports, calls, defines,
//! exports) extracted by `deep_queries` + `import_resolver`.  Provides
//! efficient traversal queries for impact analysis, architecture discovery,
//! and graph-driven context loading.

mod cross_source;
mod edge;
pub mod file_catalog;
mod meta;
mod node;
mod queries;
mod schema;
pub mod snapshot;
mod sync;

pub use edge::{Edge, EdgeKind};
pub use file_catalog::FileCatalogEntry;
pub use meta::{PropertyGraphMetaV1, load_meta, meta_path, write_meta};
pub use node::{Node, NodeKind};
pub use queries::{
    DependencyChain, GraphQuery, ImpactResult, edge_weight, file_connectivity, related_files,
};
pub use sync::{mirror_index, parse_symbol_metadata, populate_from_project_index};

use rusqlite::Connection;
use std::path::{Path, PathBuf};

/// Resolve the directory for graph.db and graph.meta.json.
///
/// Uses `$LEAN_CTX_DATA_DIR/graphs/<project_hash>/` (consistent with
/// `ProjectIndex::index_dir`).  Falls back to `<project>/.lean-ctx/`
/// only when the global data directory cannot be resolved.
pub fn graph_dir(project_root: &str) -> PathBuf {
    if let Ok(data_dir) = crate::core::data_dir::lean_ctx_data_dir() {
        let normalized = crate::core::graph_index::normalize_project_root(project_root);
        let hash = crate::core::project_hash::hash_project_root(&normalized);
        data_dir.join("graphs").join(hash)
    } else {
        Path::new(project_root).join(".lean-ctx")
    }
}

/// Transparently migrate graph.db and graph.meta.json from the old
/// per-project `.lean-ctx/` directory to the new `$DATA_DIR/graphs/` path.
fn migrate_if_needed(project_root: &str, new_dir: &Path) {
    let old_dir = Path::new(project_root).join(".lean-ctx");
    if old_dir == new_dir {
        return;
    }
    for file in &["graph.db", "graph.meta.json"] {
        let old = old_dir.join(file);
        let new = new_dir.join(file);
        if old.exists()
            && !new.exists()
            && std::fs::rename(&old, &new).is_err()
            && std::fs::copy(&old, &new).is_ok()
        {
            let _ = std::fs::remove_file(&old);
        }
    }
}

/// Property-graph engine generation. Bump whenever edge extraction changes
/// (e.g. the `type_ref` edges that connect C#/Java same-namespace consumers to
/// their definers, GH #398) so an existing graph built by an older engine is
/// transparently rebuilt on the next query instead of being served without the
/// new edges. Graphs whose `graph.meta.json` predates this stamp deserialize to
/// engine version `0`, so the first query after an upgrade rebuilds once.
pub const GRAPH_ENGINE_VERSION: u32 = 2;

/// `true` when the persisted graph was built by an engine older than
/// [`GRAPH_ENGINE_VERSION`] — or predates the version stamp entirely (missing or
/// unreadable meta) — and must therefore be rebuilt before its edges can be
/// trusted. Callers pair this with a node-count check: an empty graph is rebuilt
/// regardless; a non-empty-but-outdated graph is rebuilt by this gate.
pub fn engine_outdated(project_root: &str) -> bool {
    load_meta(project_root).is_none_or(|m| m.engine_version < GRAPH_ENGINE_VERSION)
}

pub struct CodeGraph {
    conn: Connection,
    db_path: PathBuf,
}

impl CodeGraph {
    pub fn open(project_root: &str) -> anyhow::Result<Self> {
        let db_dir = graph_dir(project_root);
        std::fs::create_dir_all(&db_dir)?;
        migrate_if_needed(project_root, &db_dir);
        let db_path = db_dir.join("graph.db");
        let conn = Connection::open(&db_path)?;
        conn.busy_timeout(std::time::Duration::from_secs(5))?;
        schema::initialize(&conn)?;
        Ok(Self { conn, db_path })
    }

    pub fn open_in_memory() -> anyhow::Result<Self> {
        let conn = Connection::open_in_memory()?;
        schema::initialize(&conn)?;
        Ok(Self {
            conn,
            db_path: PathBuf::from(":memory:"),
        })
    }

    pub fn db_path(&self) -> &Path {
        &self.db_path
    }

    pub fn connection(&self) -> &Connection {
        &self.conn
    }

    pub fn upsert_node(&self, node: &Node) -> anyhow::Result<i64> {
        node::upsert(&self.conn, node)
    }

    pub fn upsert_edge(&self, edge: &Edge) -> anyhow::Result<()> {
        edge::upsert(&self.conn, edge)
    }

    pub fn get_node_by_path(&self, file_path: &str) -> anyhow::Result<Option<Node>> {
        node::get_by_path(&self.conn, file_path)
    }

    pub fn get_node_by_symbol(&self, name: &str, file_path: &str) -> anyhow::Result<Option<Node>> {
        node::get_by_symbol(&self.conn, name, file_path)
    }

    pub fn remove_file_nodes(&self, file_path: &str) -> anyhow::Result<()> {
        node::remove_by_file(&self.conn, file_path)
    }

    pub fn edges_from(&self, node_id: i64) -> anyhow::Result<Vec<Edge>> {
        edge::from_node(&self.conn, node_id)
    }

    pub fn edges_to(&self, node_id: i64) -> anyhow::Result<Vec<Edge>> {
        edge::to_node(&self.conn, node_id)
    }

    pub fn dependents(&self, file_path: &str) -> anyhow::Result<Vec<String>> {
        queries::dependents(&self.conn, file_path)
    }

    pub fn dependencies(&self, file_path: &str) -> anyhow::Result<Vec<String>> {
        queries::dependencies(&self.conn, file_path)
    }

    pub fn impact_analysis(
        &self,
        file_path: &str,
        max_depth: usize,
    ) -> anyhow::Result<ImpactResult> {
        queries::impact_analysis(&self.conn, file_path, max_depth)
    }

    pub fn dependency_chain(
        &self,
        from: &str,
        to: &str,
    ) -> anyhow::Result<Option<DependencyChain>> {
        queries::dependency_chain(&self.conn, from, to)
    }

    pub fn related_files(
        &self,
        file_path: &str,
        limit: usize,
    ) -> anyhow::Result<Vec<(String, f64)>> {
        queries::related_files(&self.conn, file_path, limit)
    }

    pub fn file_connectivity(
        &self,
        file_path: &str,
    ) -> anyhow::Result<std::collections::HashMap<String, (usize, usize)>> {
        queries::file_connectivity(&self.conn, file_path)
    }

    pub fn node_count(&self) -> anyhow::Result<usize> {
        node::count(&self.conn)
    }

    pub fn edge_count(&self) -> anyhow::Result<usize> {
        edge::count(&self.conn)
    }

    /// Persist a cross-source edge (code file ↔ external source URI) into the
    /// dedicated `cross_source_edges` table. Keeps the higher weight on conflict
    /// so repeated provider ingests don't downgrade an established link (#682).
    pub fn upsert_cross_source_edge(
        &self,
        from: &str,
        to: &str,
        kind: &str,
        weight: f32,
    ) -> anyhow::Result<()> {
        cross_source::upsert(&self.conn, from, to, kind, weight)
    }

    /// All cross-source edges as `IndexEdge`s, ready for `cross_source_hints`.
    pub fn all_cross_source_edges(&self) -> Vec<crate::core::graph_index::IndexEdge> {
        cross_source::all(&self.conn).unwrap_or_default()
    }

    pub fn cross_source_edge_count(&self) -> anyhow::Result<usize> {
        cross_source::count(&self.conn)
    }

    pub fn clear(&self) -> anyhow::Result<()> {
        self.conn.execute_batch(
            "DELETE FROM edges; DELETE FROM nodes; DELETE FROM file_catalog; \
             DELETE FROM cross_source_edges;",
        )?;
        Ok(())
    }

    /// Clear only the code graph (nodes, edges, file catalog), preserving
    /// provider `cross_source_edges`. Used by the graph_index→PG mirror (#682.1)
    /// so rebuilding the code graph never drops lateral provider hints, which
    /// live in their own table and are repopulated on a separate ingest cycle.
    pub fn clear_code_graph(&self) -> anyhow::Result<()> {
        self.conn
            .execute_batch("DELETE FROM edges; DELETE FROM nodes; DELETE FROM file_catalog;")?;
        Ok(())
    }

    pub fn upsert_file_catalog(&self, entry: &FileCatalogEntry) -> anyhow::Result<()> {
        file_catalog::upsert(&self.conn, entry)
    }

    pub fn get_file_catalog(&self, path: &str) -> anyhow::Result<Option<FileCatalogEntry>> {
        file_catalog::get(&self.conn, path)
    }

    pub fn file_catalog_count(&self) -> anyhow::Result<usize> {
        file_catalog::count(&self.conn)
    }

    pub fn file_catalog_paths(&self) -> anyhow::Result<Vec<String>> {
        file_catalog::all_paths(&self.conn)
    }

    pub fn find_symbols(
        &self,
        name: &str,
        file_filter: Option<&str>,
        kind_filter: Option<&str>,
    ) -> anyhow::Result<Vec<Node>> {
        node::find_symbols(&self.conn, name, file_filter, kind_filter)
    }

    pub fn symbol_count(&self) -> anyhow::Result<usize> {
        node::symbol_count(&self.conn)
    }

    /// Every symbol node with its line span (unfiltered). Backend for the
    /// call-graph symbol table after the `graph_index` teardown (#696).
    pub fn all_symbols(&self) -> anyhow::Result<Vec<Node>> {
        node::all_symbols(&self.conn)
    }

    pub fn all_edges_flat(&self) -> anyhow::Result<Vec<(String, String, String, f64)>> {
        node::all_edges_flat(&self.conn)
    }
}

#[cfg(test)]
mod tests {
    use super::*;
    use crate::core::data_dir::test_env_lock;

    fn test_graph() -> CodeGraph {
        CodeGraph::open_in_memory().unwrap()
    }

    #[test]
    fn create_and_query_nodes() {
        let g = test_graph();

        let id = g.upsert_node(&Node::file("src/main.rs")).unwrap();
        assert!(id > 0);

        let found = g.get_node_by_path("src/main.rs").unwrap();
        assert!(found.is_some());
        assert_eq!(found.unwrap().file_path, "src/main.rs");
    }

    #[test]
    fn create_and_query_edges() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("src/a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("src/b.rs")).unwrap();

        g.upsert_edge(&Edge::new(a, b, EdgeKind::Imports)).unwrap();

        let from_a = g.edges_from(a).unwrap();
        assert_eq!(from_a.len(), 1);
        assert_eq!(from_a[0].target_id, b);

        let to_b = g.edges_to(b).unwrap();
        assert_eq!(to_b.len(), 1);
        assert_eq!(to_b[0].source_id, a);
    }

    #[test]
    fn dependents_query() {
        let g = test_graph();

        let main = g.upsert_node(&Node::file("src/main.rs")).unwrap();
        let lib = g.upsert_node(&Node::file("src/lib.rs")).unwrap();
        let utils = g.upsert_node(&Node::file("src/utils.rs")).unwrap();

        g.upsert_edge(&Edge::new(main, lib, EdgeKind::Imports))
            .unwrap();
        g.upsert_edge(&Edge::new(utils, lib, EdgeKind::Imports))
            .unwrap();

        let deps = g.dependents("src/lib.rs").unwrap();
        assert_eq!(deps.len(), 2);
        assert!(deps.contains(&"src/main.rs".to_string()));
        assert!(deps.contains(&"src/utils.rs".to_string()));
    }

    #[test]
    fn dependencies_query() {
        let g = test_graph();

        let main = g.upsert_node(&Node::file("src/main.rs")).unwrap();
        let lib = g.upsert_node(&Node::file("src/lib.rs")).unwrap();
        let config = g.upsert_node(&Node::file("src/config.rs")).unwrap();

        g.upsert_edge(&Edge::new(main, lib, EdgeKind::Imports))
            .unwrap();
        g.upsert_edge(&Edge::new(main, config, EdgeKind::Imports))
            .unwrap();

        let deps = g.dependencies("src/main.rs").unwrap();
        assert_eq!(deps.len(), 2);
    }

    #[test]
    #[allow(clippy::many_single_char_names)] // graph test nodes: a, b, c, d, e
    fn impact_analysis_depth() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("b.rs")).unwrap();
        let c = g.upsert_node(&Node::file("c.rs")).unwrap();
        let d = g.upsert_node(&Node::file("d.rs")).unwrap();

        g.upsert_edge(&Edge::new(b, a, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(c, b, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(d, c, EdgeKind::Imports)).unwrap();

        let impact = g.impact_analysis("a.rs", 2).unwrap();
        assert!(impact.affected_files.contains(&"b.rs".to_string()));
        assert!(impact.affected_files.contains(&"c.rs".to_string()));
        assert!(!impact.affected_files.contains(&"d.rs".to_string()));

        let deep = g.impact_analysis("a.rs", 10).unwrap();
        assert!(deep.affected_files.contains(&"d.rs".to_string()));
    }

    #[test]
    fn upsert_idempotent() {
        let g = test_graph();

        let id1 = g.upsert_node(&Node::file("src/main.rs")).unwrap();
        let id2 = g.upsert_node(&Node::file("src/main.rs")).unwrap();
        assert_eq!(id1, id2);
        assert_eq!(g.node_count().unwrap(), 1);
    }

    #[test]
    fn remove_file_cascades() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("src/a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("src/b.rs")).unwrap();
        let sym = g
            .upsert_node(&Node::symbol("MyStruct", "src/a.rs", NodeKind::Symbol))
            .unwrap();

        g.upsert_edge(&Edge::new(a, b, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(sym, b, EdgeKind::Calls)).unwrap();

        g.remove_file_nodes("src/a.rs").unwrap();

        assert!(g.get_node_by_path("src/a.rs").unwrap().is_none());
        assert_eq!(g.edge_count().unwrap(), 0);
    }

    #[test]
    fn dependency_chain_found() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("b.rs")).unwrap();
        let c = g.upsert_node(&Node::file("c.rs")).unwrap();

        g.upsert_edge(&Edge::new(a, b, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(b, c, EdgeKind::Imports)).unwrap();

        let chain = g.dependency_chain("a.rs", "c.rs").unwrap();
        assert!(chain.is_some());
        let chain = chain.unwrap();
        assert_eq!(chain.path, vec!["a.rs", "b.rs", "c.rs"]);
    }

    #[test]
    fn counts() {
        let g = test_graph();
        assert_eq!(g.node_count().unwrap(), 0);
        assert_eq!(g.edge_count().unwrap(), 0);

        let a = g.upsert_node(&Node::file("a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("b.rs")).unwrap();
        g.upsert_edge(&Edge::new(a, b, EdgeKind::Imports)).unwrap();

        assert_eq!(g.node_count().unwrap(), 2);
        assert_eq!(g.edge_count().unwrap(), 1);
    }

    #[test]
    fn multi_edge_dependents() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("src/a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("src/b.rs")).unwrap();
        let c = g.upsert_node(&Node::file("src/c.rs")).unwrap();

        g.upsert_edge(&Edge::new(b, a, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(c, a, EdgeKind::Calls)).unwrap();

        let deps = g.dependents("src/a.rs").unwrap();
        assert_eq!(deps.len(), 2);
        assert!(deps.contains(&"src/b.rs".to_string()));
        assert!(deps.contains(&"src/c.rs".to_string()));
    }

    #[test]
    fn multi_edge_impact_analysis() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("b.rs")).unwrap();
        let c = g.upsert_node(&Node::file("c.rs")).unwrap();

        g.upsert_edge(&Edge::new(b, a, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(c, b, EdgeKind::Calls)).unwrap();

        let impact = g.impact_analysis("a.rs", 10).unwrap();
        assert!(impact.affected_files.contains(&"b.rs".to_string()));
        assert!(impact.affected_files.contains(&"c.rs".to_string()));
    }

    #[test]
    fn related_files_scored() {
        let g = test_graph();

        let a = g.upsert_node(&Node::file("a.rs")).unwrap();
        let b = g.upsert_node(&Node::file("b.rs")).unwrap();
        let c = g.upsert_node(&Node::file("c.rs")).unwrap();

        g.upsert_edge(&Edge::new(a, b, EdgeKind::Imports)).unwrap();
        g.upsert_edge(&Edge::new(a, b, EdgeKind::Calls)).unwrap();
        g.upsert_edge(&Edge::new(a, c, EdgeKind::TypeRef)).unwrap();

        let related = g.related_files("a.rs", 10).unwrap();
        assert_eq!(related.len(), 2);
        let b_score = related.iter().find(|(p, _)| p == "b.rs").unwrap().1;
        let c_score = related.iter().find(|(p, _)| p == "c.rs").unwrap().1;
        assert!(
            b_score > c_score,
            "b.rs has imports+calls, should rank higher than c.rs with type_ref"
        );
    }

    #[test]
    fn graph_dir_uses_data_dir_when_set() {
        let tmp = tempfile::tempdir().unwrap();
        let project = tmp.path().join("myproject");
        std::fs::create_dir_all(&project).unwrap();

        let data_dir = tmp.path().join("data");
        std::fs::create_dir_all(&data_dir).unwrap();

        let _guard = test_env_lock();
        crate::test_env::set_var("LEAN_CTX_DATA_DIR", data_dir.to_str().unwrap());

        let dir = graph_dir(project.to_str().unwrap());
        assert!(dir.starts_with(&data_dir));
        assert!(dir.to_string_lossy().contains("graphs"));

        crate::test_env::remove_var("LEAN_CTX_DATA_DIR");
    }

    #[test]
    fn graph_dir_returns_consistent_hash_dir() {
        let tmp = tempfile::tempdir().unwrap();
        let project = tmp.path().join("hash_project");
        std::fs::create_dir_all(&project).unwrap();

        let data_dir = tmp.path().join("data2");
        std::fs::create_dir_all(&data_dir).unwrap();

        let _guard = test_env_lock();
        crate::test_env::set_var("LEAN_CTX_DATA_DIR", data_dir.to_str().unwrap());

        let dir1 = graph_dir(project.to_str().unwrap());
        let dir2 = graph_dir(project.to_str().unwrap());
        assert_eq!(dir1, dir2, "graph_dir should be deterministic");
        assert!(dir1.to_string_lossy().contains("graphs"));

        crate::test_env::remove_var("LEAN_CTX_DATA_DIR");
    }

    #[test]
    fn migration_moves_old_files() {
        let tmp = tempfile::tempdir().unwrap();
        let project = tmp.path().join("migtest");
        let old_dir = project.join(".lean-ctx");
        std::fs::create_dir_all(&old_dir).unwrap();
        std::fs::write(old_dir.join("graph.db"), b"old-db-content").unwrap();
        std::fs::write(old_dir.join("graph.meta.json"), b"old-meta").unwrap();

        let new_dir = tmp.path().join("newloc");
        std::fs::create_dir_all(&new_dir).unwrap();

        migrate_if_needed(project.to_str().unwrap(), &new_dir);

        assert!(new_dir.join("graph.db").exists());
        assert!(new_dir.join("graph.meta.json").exists());
        assert!(!old_dir.join("graph.db").exists());
        assert!(!old_dir.join("graph.meta.json").exists());
        assert_eq!(
            std::fs::read_to_string(new_dir.join("graph.db")).unwrap(),
            "old-db-content"
        );
    }

    #[test]
    fn migration_skips_when_new_exists() {
        let tmp = tempfile::tempdir().unwrap();
        let project = tmp.path().join("skiptest");
        let old_dir = project.join(".lean-ctx");
        std::fs::create_dir_all(&old_dir).unwrap();
        std::fs::write(old_dir.join("graph.db"), b"old").unwrap();

        let new_dir = tmp.path().join("newloc2");
        std::fs::create_dir_all(&new_dir).unwrap();
        std::fs::write(new_dir.join("graph.db"), b"already-there").unwrap();

        migrate_if_needed(project.to_str().unwrap(), &new_dir);

        assert_eq!(
            std::fs::read_to_string(new_dir.join("graph.db")).unwrap(),
            "already-there"
        );
        assert!(old_dir.join("graph.db").exists());
    }

    #[test]
    fn open_with_data_dir() {
        let tmp = tempfile::tempdir().unwrap();
        let project = tmp.path().join("opentest");
        std::fs::create_dir_all(&project).unwrap();

        let data_dir = tmp.path().join("xdata");
        std::fs::create_dir_all(&data_dir).unwrap();

        let _guard = test_env_lock();
        crate::test_env::set_var("LEAN_CTX_DATA_DIR", data_dir.to_str().unwrap());

        let g = CodeGraph::open(project.to_str().unwrap()).unwrap();
        assert!(g.db_path().starts_with(&data_dir));
        assert!(g.db_path().to_string_lossy().contains("graph.db"));

        crate::test_env::remove_var("LEAN_CTX_DATA_DIR");
    }

    #[test]
    fn meta_path_uses_graph_dir() {
        let tmp = tempfile::tempdir().unwrap();
        let project = tmp.path().join("metatest");
        std::fs::create_dir_all(&project).unwrap();

        let data_dir = tmp.path().join("mdata");
        std::fs::create_dir_all(&data_dir).unwrap();

        let _guard = test_env_lock();
        crate::test_env::set_var("LEAN_CTX_DATA_DIR", data_dir.to_str().unwrap());

        let mp = meta::meta_path(project.to_str().unwrap());
        assert!(mp.starts_with(&data_dir));
        assert!(mp.to_string_lossy().contains("graph.meta.json"));

        crate::test_env::remove_var("LEAN_CTX_DATA_DIR");
    }

    #[test]
    fn engine_outdated_flags_old_and_missing_meta() {
        let _iso = crate::core::data_dir::isolated_data_dir();
        let proj = tempfile::tempdir().unwrap();
        let root = proj.path().to_str().unwrap();

        // No meta on disk yet -> outdated (an unbuilt graph forces a build).
        assert!(engine_outdated(root), "missing meta must read as outdated");

        // Meta from an engine generation before the version stamp -> outdated.
        let mut meta = PropertyGraphMetaV1 {
            built_at: "2026-01-01T00:00:00Z".to_string(),
            engine_version: 0,
            ..Default::default()
        };
        write_meta(root, &meta).unwrap();
        assert!(
            engine_outdated(root),
            "engine_version 0 must read as outdated"
        );

        // Meta stamped with the current engine -> up to date.
        meta.engine_version = GRAPH_ENGINE_VERSION;
        write_meta(root, &meta).unwrap();
        assert!(
            !engine_outdated(root),
            "current engine_version must read as up to date"
        );
    }
}