ldsc 0.3.1

LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "ldsc"
version = "0.3.1"
authors = ["Sharif Haason"]
build = false
exclude = [
    "data/*",
    "*.bed",
    "*.bim",
    "*.fam",
    "settings*.json",
    "test_rust.sh",
    "ldsc.wiki/*",
    "ldsc_py/*",
    "bed-reader/*",
    "cubecl/*",
    "docs/ldsc_paper.md",
    "docs/ldsc_supplementary_note.md",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC"
homepage = "https://github.com/sharifhsn/ldsc"
documentation = "https://github.com/sharifhsn/ldsc#readme"
readme = "README.md"
keywords = [
    "genomics",
    "gwas",
    "statistics",
    "bioinformatics",
    "ldsc",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "GPL-3.0-only"
repository = "https://github.com/sharifhsn/ldsc"

[features]
gpu = [
    "dep:cubecl",
    "dep:cubek-matmul",
]

[[bin]]
name = "ldsc"
path = "src/main.rs"

[dependencies.anyhow]
version = "1"

[dependencies.bzip2-rs]
version = "0.1"

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.cubecl]
version = "=0.10.0-pre.2"
features = ["cuda"]
optional = true

[dependencies.cubek-matmul]
version = "=0.2.0-pre.2"
optional = true

[dependencies.faer]
version = "0.24.0"

[dependencies.flate2]
version = "1"

[dependencies.polars]
version = "0.53"
features = [
    "lazy",
    "csv",
    "decompress",
    "strings",
]

[dependencies.rayon]
version = "1"

[dependencies.statrs]
version = "0.18"

[dependencies.tempfile]
version = "3"

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]

[dev-dependencies]

[profile.release]
opt-level = 3
lto = "thin"
codegen-units = 1