ldsc 0.1.1

LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "ldsc"
version = "0.1.1"
authors = ["Sharif Haason"]
build = false
exclude = [
    "data/*",
    "*.bed",
    "*.bim",
    "*.fam",
    "settings*.json",
    "test_rust.sh",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC"
homepage = "https://github.com/sharifhsn/ldsc"
documentation = "https://github.com/sharifhsn/ldsc#readme"
readme = "README.md"
keywords = [
    "genomics",
    "gwas",
    "statistics",
    "bioinformatics",
    "ldsc",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "GPL-3.0-only"
repository = "https://github.com/sharifhsn/ldsc"

[features]
blas-openblas-static = [
    "blas-src",
    "openblas-src",
    "openblas-src/static",
    "ndarray-linalg/blas",
    "ndarray-linalg/openblas-static",
]
blas-openblas-system = [
    "blas-src",
    "openblas-src",
    "openblas-src/system",
    "ndarray-linalg/blas",
    "ndarray-linalg/openblas-system",
]
default = ["blas-openblas-static"]

[[bin]]
name = "ldsc"
path = "src/main.rs"

[[test]]
name = "integration"
path = "tests/integration.rs"

[dependencies.anyhow]
version = "1"

[dependencies.bed-reader]
version = "1"
default-features = false

[dependencies.blas-src]
version = "0.10"
features = ["openblas"]
optional = true
default-features = false

[dependencies.bzip2-rs]
version = "0.1.2"

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.flate2]
version = "1"

[dependencies.ndarray]
version = "0.16"
features = [
    "rayon",
    "blas",
]

[dependencies.ndarray-linalg]
version = "0.17"
default-features = false

[dependencies.openblas-src]
version = "0.10"
features = [
    "cblas",
    "lapacke",
]
optional = true
default-features = false

[dependencies.polars]
version = "0.53"
features = [
    "lazy",
    "csv",
    "parquet",
    "decompress",
    "strings",
]

[dependencies.rayon]
version = "1"

[dependencies.statrs]
version = "0.18"

[dependencies.tempfile]
version = "3"

[dependencies.thiserror]
version = "2"

[dev-dependencies]

[profile.release]
opt-level = 3
lto = "thin"
codegen-units = 1