ldsc 0.1.1

LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC
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name: CI

on:
  push:
    branches: [main]
  pull_request:

env:
  CARGO_TERM_COLOR: always
  RUST_BACKTRACE: 1
  CARGO_INCREMENTAL: "0"
  # Pin OpenBLAS to a conservative x86_64 target so cached artifacts are safe
  # across different GitHub runner CPU generations (avoids SIGILL on cache hit).
  OPENBLAS_TARGET: "SSE_GENERIC"

jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - name: Install Rust
        uses: dtolnay/rust-toolchain@stable
        with:
          components: clippy

      # Caches ~/.cargo/registry, ~/.cargo/git, and target/ (including the
      # cmake-built OpenBLAS static library).  Key includes rustc version and
      # Cargo.lock hash; OPENBLAS_DYNAMIC_ARCH is baked into the key so a
      # config change triggers a clean rebuild.
      - name: Cache Rust build artifacts
        uses: Swatinem/rust-cache@v2
        with:
          env-vars: OPENBLAS_TARGET
          cache-on-failure: true

      - name: Install BLAS dependencies
        run: sudo apt-get update && sudo apt-get install -y cmake gfortran libopenblas-dev pkg-config

      - name: cargo check
        run: cargo check --release --no-default-features --features blas-openblas-system

      - name: cargo fmt
        run: cargo fmt --check

      - name: cargo clippy
        run: cargo clippy --release --no-default-features --features blas-openblas-system -- -D warnings

      - name: cargo test
        run: cargo test --release --no-default-features --features blas-openblas-system  # ldscore_smoke is #[ignore] — needs large BED file

      - name: Dump OpenBLAS build logs on failure
        if: failure()
        run: |
          echo "Searching for OpenBLAS build logs..."
          find target -type f \( -name out.log -o -name err.log \) -print || true
          for f in $(find target -type f \( -name out.log -o -name err.log \) -print); do
            echo "===== $f ====="
            tail -n 200 "$f" || true
          done
          if [ -d "$HOME/.local/share" ]; then
            find "$HOME/.local/share" -type f \( -name out.log -o -name err.log \) -print || true
            for f in $(find "$HOME/.local/share" -type f \( -name out.log -o -name err.log \) -print); do
              echo "===== $f ====="
              tail -n 200 "$f" || true
            done
          fi