ldsc 0.1.0

LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "ldsc"
version = "0.1.0"
authors = ["Sharif Amlani"]
build = false
exclude = [
    "data/*",
    "*.bed",
    "*.bim",
    "*.fam",
    "settings*.json",
    "test_rust.sh",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "LD Score Regression — fast Rust reimplementation of Bulik-Sullivan et al. LDSC"
homepage = "https://github.com/sharifhsn/ldsc"
documentation = "https://github.com/sharifhsn/ldsc#readme"
readme = "README.md"
keywords = [
    "genomics",
    "gwas",
    "statistics",
    "bioinformatics",
    "ldsc",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "GPL-3.0-only"
repository = "https://github.com/sharifhsn/ldsc"

[[bin]]
name = "ldsc"
path = "src/main.rs"

[[test]]
name = "integration"
path = "tests/integration.rs"

[dependencies.anyhow]
version = "1"

[dependencies.bed-reader]
version = "1"
default-features = false

[dependencies.blas-src]
version = "0.10"
features = ["openblas"]
default-features = false

[dependencies.clap]
version = "4"
features = ["derive"]

[dependencies.flate2]
version = "1"

[dependencies.ndarray]
version = "0.16"
features = [
    "rayon",
    "blas",
]

[dependencies.ndarray-linalg]
version = "0.17"
features = ["openblas-static"]

[dependencies.polars]
version = "0.53"
features = [
    "lazy",
    "csv",
    "parquet",
    "decompress",
]

[dependencies.rayon]
version = "1"

[dependencies.statrs]
version = "0.18"

[dependencies.thiserror]
version = "2"

[dev-dependencies.tempfile]
version = "3"

[profile.release]
opt-level = 3
lto = "thin"
codegen-units = 1
debug = 0