lammps-sys 0.6.0

Generates bindings to LAMMPS' C interface (with optional builds from source)
Documentation
/* -*- c++ -*- ----------------------------------------------------------
   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
   http://lammps.sandia.gov, Sandia National Laboratories
   Steve Plimpton, sjplimp@sandia.gov

   Copyright (2003) Sandia Corporation.  Under the terms of Contract
   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
   certain rights in this software.  This software is distributed under
   the GNU General Public License.

   See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */

#ifdef PAIR_CLASS

PairStyle(tersoff/mod,PairTersoffMOD)

#else

#ifndef LMP_PAIR_TERSOFF_MOD_H
#define LMP_PAIR_TERSOFF_MOD_H

#include "pair_tersoff.h"
#include <cmath>

namespace LAMMPS_NS {

class PairTersoffMOD : public PairTersoff {
 public:
  PairTersoffMOD(class LAMMPS *);
  ~PairTersoffMOD() {}

 protected:
  virtual void read_file(char *);
  virtual void setup_params();
  double zeta(Param *, double, double, double *, double *);

  double ters_fc(double, Param *);
  double ters_fc_d(double, Param *);
  double ters_bij(double, Param *);
  double ters_bij_d(double, Param *);
  void ters_zetaterm_d(double, double *, double, double *, double,
                               double *, double *, double *, Param *);

  // inlined functions for efficiency
  // these replace but do not override versions in PairTersoff
  // since overriding virtual inlined functions is best avoided

  inline double ters_gijk_mod(const double costheta,
                              const Param * const param) const {
    const double ters_c1 = param->c1;
    const double ters_c2 = param->c2;
    const double ters_c3 = param->c3;
    const double ters_c4 = param->c4;
    const double ters_c5 = param->c5;
    const double tmp_h = (param->h - costheta)*(param->h - costheta);

    return ters_c1 + (ters_c2*tmp_h/(ters_c3 + tmp_h)) *
      (1.0 + ters_c4*exp(-ters_c5*tmp_h));
  }

  inline double ters_gijk_d_mod(const double costheta,
                                const Param * const param) const {
    const double ters_c2 = param->c2;
    const double ters_c3 = param->c3;
    const double ters_c4 = param->c4;
    const double ters_c5 = param->c5;
    const double tmp_h = (param->h - costheta)*(param->h - costheta);
    const double g1 = (param->h - costheta)/(ters_c3 + tmp_h);
    const double g2 = exp(-ters_c5*tmp_h);

    return -2.0*ters_c2*g1*((1 + ters_c4*g2)*(1 + g1*(costheta - param->h)) -
                            tmp_h*ters_c4*ters_c5*g2);
  }
};

}

#endif
#endif

/* ERROR/WARNING messages:

E: Cannot open Tersoff potential file %s

The specified potential file cannot be opened.  Check that the path
and name are correct.

E: Incorrect format in Tersoff potential file

Incorrect number of words per line in the potential file.

E: Illegal Tersoff parameter

One or more of the coefficients defined in the potential file is
invalid.

E: Potential file has duplicate entry

The potential file has more than one entry for the same element.

E: Potential file is missing an entry

The potential file does not have a needed entry.

*/