lammps-sys 0.6.0

Generates bindings to LAMMPS' C interface (with optional builds from source)
Documentation
# knl = Flags for Knights Landing Xeon Phi Processor,Intel Compiler/MPI,MKL FFT
# module load perftools-base perftools
# make theta -j 8
# pat_build -g mpi -u ./lmp_theta

SHELL = /bin/sh

# ---------------------------------------------------------------------
# compiler/linker settings
# specify flags and libraries needed for your compiler

CC =        CC -mkl
#OPTFLAGS =       -O0
OPTFLAGS =      -xMIC-AVX512 -O3 -fp-model fast=2 -no-prec-div -qoverride-limits
CCFLAGS =   -g -qopenmp -DLAMMPS_MEMALIGN=64 -qno-offload \
                -fno-alias -ansi-alias -restrict $(OPTFLAGS)
#CCFLAGS +=      -DLMP_INTEL_NO_TBB
#CCFLAGS +=      -DLAMMPS_BIGBIG
#CCFLAGS +=      -D_USE_PAPI
#CCFLAGS +=      -D_USE_CRAYPAT_API
SHFLAGS =   -fPIC
DEPFLAGS =  -M

LINK =      $(CC)
LINKFLAGS = -g -qopenmp $(OPTFLAGS)
LINKFLAGS += -dynamic
LIB =
#LIB +=           -L${TBBROOT}/lib/intel64/gcc4.7 -ltbbmalloc
LIB +=           -ltbbmalloc
#LIB +=          /soft/debuggers/forge-7.0-2017-02-16/lib/64/libdmallocthcxx.a -zmuldefs
SIZE =      size

ARCHIVE =   ar
ARFLAGS =   -rc
SHLIBFLAGS =    -shared

# ---------------------------------------------------------------------
# LAMMPS-specific settings, all OPTIONAL
# specify settings for LAMMPS features you will use
# if you change any -D setting, do full re-compile after "make clean"

# LAMMPS ifdef settings
# see possible settings in Section 2.2 (step 4) of manual

LMP_INC =   -DLAMMPS_GZIP #-DLAMMPS_JPEG

# MPI library
# see discussion in Section 2.2 (step 5) of manual
# MPI wrapper compiler/linker can provide this info
# can point to dummy MPI library in src/STUBS as in Makefile.serial
# use -D MPICH and OMPI settings in INC to avoid C++ lib conflicts
# INC = path for mpi.h, MPI compiler settings
# PATH = path for MPI library
# LIB = name of MPI library

MPI_INC =       -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1
MPI_PATH =
MPI_LIB =

# FFT library
# see discussion in Section 2.2 (step 6) of manaul
# can be left blank to use provided KISS FFT library
# INC = -DFFT setting, e.g. -DFFT_FFTW, FFT compiler settings
# PATH = path for FFT library
# LIB = name of FFT library

FFT_INC =       -DFFT_MKL -DFFT_SINGLE
FFT_PATH =
FFT_LIB =       -L$(MKLROOT)/lib/intel64/ -Wl,--start-group -lmkl_intel_ilp64 \
                -lmkl_intel_thread -lmkl_core -Wl,--end-group

# JPEG and/or PNG library
# see discussion in Section 2.2 (step 7) of manual
# only needed if -DLAMMPS_JPEG or -DLAMMPS_PNG listed with LMP_INC
# INC = path(s) for jpeglib.h and/or png.h
# PATH = path(s) for JPEG library and/or PNG library
# LIB = name(s) of JPEG library and/or PNG library

JPG_INC =
JPG_PATH =
JPG_LIB =

# ---------------------------------------------------------------------
# build rules and dependencies
# do not edit this section

include Makefile.package.settings
include Makefile.package

EXTRA_INC = $(LMP_INC) $(PKG_INC) $(MPI_INC) $(FFT_INC) $(JPG_INC) $(PKG_SYSINC)
EXTRA_PATH = $(PKG_PATH) $(MPI_PATH) $(FFT_PATH) $(JPG_PATH) $(PKG_SYSPATH)
EXTRA_LIB = $(PKG_LIB) $(MPI_LIB) $(FFT_LIB) $(JPG_LIB) $(PKG_SYSLIB)

# Path to src files

vpath %.cpp ..
vpath %.h ..

# Link target

$(EXE): $(OBJ)
    $(LINK) $(LINKFLAGS) $(EXTRA_PATH) $(OBJ) $(EXTRA_LIB) $(LIB) -o $(EXE)
    $(SIZE) $(EXE)

# Library targets

lib:    $(OBJ)
    $(ARCHIVE) $(ARFLAGS) $(EXE) $(OBJ)

shlib:  $(OBJ)
    $(CC) $(CCFLAGS) $(SHFLAGS) $(SHLIBFLAGS) $(EXTRA_PATH) -o $(EXE) \
        $(OBJ) $(EXTRA_LIB) $(LIB)

# Compilation rules

%.o:%.cpp
    $(CC) $(CCFLAGS) $(SHFLAGS) $(EXTRA_INC) -c $<

%.d:%.cpp
    $(CC) $(CCFLAGS) $(EXTRA_INC) $(DEPFLAGS) $< > $@

%.o:%.cu
    $(CC) $(CCFLAGS) $(SHFLAGS) $(EXTRA_INC) -c $<

# Individual dependencies

depend : fastdep.exe $(SRC)
    @./fastdep.exe $(EXTRA_INC) -- $^ > .depend || exit 1

fastdep.exe: ../DEPEND/fastdep.c
    icc -O -o $@ $<

sinclude .depend