kmerutils 0.0.14

Kmer counting, hashing, sequence sketching
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54

extern crate rand;

// for logging (debug mostly, switched at compile time in cargo.toml)
#[macro_use]
extern crate lazy_static;



// basic stuff bases definitions, kmer , kmer generation sequences,
pub mod base;

pub mod aautils;

pub mod statutils;
pub mod io;
pub mod parsearg;
pub mod sketcharg;
pub mod groups;

// quality stuff
pub mod quality;

// hashing stuff

pub mod hashed;
pub mod nohasher;

// sketching methods
pub mod sketching;


// contig generation

pub mod anchor;
pub mod redisbase;


pub mod prelude;


lazy_static! {
    #[allow(dead_code)]
    pub static ref LOG: u64 = {
        
        init_log()
    };
}
// install a logger facility
// set RUST_LOG to trace, warn debug off ....
fn init_log() -> u64 {
    env_logger::Builder::from_default_env().init();
    println!("\n ************** initializing logger from env *****************\n");    
    1
}