kmerust 0.2.1

A fast, parallel k-mer counter for DNA sequences in FASTA files
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.75"
name = "kmerust"
version = "0.2.1"
authors = ["Joseph Livesey <jlivesey@gmail.com>"]
build = false
include = [
    "src/*",
    "LICENSE",
    "README.md",
    "CHANGELOG.md",
    "tests/**/*",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A fast, parallel k-mer counter for DNA sequences in FASTA files"
homepage = "https://github.com/suchapalaver/kmerust"
readme = "README.md"
keywords = [
    "bioinformatics",
    "kmer",
    "dna",
    "fasta",
    "genomics",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT"
repository = "https://github.com/suchapalaver/kmerust"

[features]
async = ["dep:tokio"]
default = ["rust-bio"]
full = [
    "production",
    "async",
]
gzip = ["dep:flate2"]
mmap = ["dep:memmap2"]
needletail = ["dep:needletail"]
production = [
    "gzip",
    "mmap",
    "tracing",
]
rust-bio = []
tracing = [
    "dep:tracing",
    "dep:tracing-subscriber",
]

[lib]
name = "kmerust"
path = "src/lib.rs"

[[bin]]
name = "kmerust"
path = "src/main.rs"

[[test]]
name = "gzip_tests"
path = "tests/gzip_tests.rs"

[[test]]
name = "integration_tests"
path = "tests/integration_tests.rs"

[[test]]
name = "jellyfish_compat"
path = "tests/jellyfish_compat.rs"

[[test]]
name = "library_tests"
path = "tests/library_tests.rs"

[[test]]
name = "mmap_tests"
path = "tests/mmap_tests.rs"

[[test]]
name = "progress_tests"
path = "tests/progress_tests.rs"

[[test]]
name = "property_tests"
path = "tests/property_tests.rs"

[[test]]
name = "tracing_tests"
path = "tests/tracing_tests.rs"

[dependencies.bio]
version = "3.0.0"

[dependencies.bytes]
version = "1.11.0"

[dependencies.clap]
version = "4.5"
features = ["derive"]

[dependencies.colored]
version = "3.1"

[dependencies.dashmap]
version = "5.5"

[dependencies.flate2]
version = "1.0"
optional = true

[dependencies.memmap2]
version = "0.9"
optional = true

[dependencies.needletail]
version = "0.6"
optional = true

[dependencies.rayon]
version = "1.11"

[dependencies.rustc-hash]
version = "2.1"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.thiserror]
version = "2.0"

[dependencies.tokio]
version = "1.0"
features = [
    "rt-multi-thread",
    "macros",
]
optional = true

[dependencies.tracing]
version = "0.1"
optional = true

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]
optional = true

[dev-dependencies.criterion]
version = "0.5"
features = ["html_reports"]

[dev-dependencies.insta]
version = "1.46"

[dev-dependencies.proptest]
version = "1.6"

[dev-dependencies.tempfile]
version = "3.15"

[dev-dependencies.tracing-test]
version = "0.2"