Module utils 

Structs

ClassifyResults

SingletonKmers

Constants

BINSIZE

Discrete bin size to contract regions

CHAIN_DISTANCE

Chain distance to merge regions

DEFAULT_FLANK_SIZE

Flank size to extract from the region

MAX_DE

Maximum divergence

Functions

index_bam

Build BAM index if needed

need_update

Check if any file in the list a is newer than any file in the list b

prefix

Get basename

prefix_until_dot

Get basename and up to the first dot in the path

sh

Run shell command