kira-ls-aligner 0.1.0

Unified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with BWA-MEM2-style exact-match anchoring and output semantics. The goal is drop-in compatibility with bwa-mem pipelines while supporting long reads efficiently.
Documentation 
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pub mod aligner_core;
pub mod alignment;
pub mod chaining;
pub mod cli;
pub mod index;
pub mod io;
pub mod mapq;
pub mod pipeline;
pub mod seeding;
pub mod simd;
pub mod sketch;
pub mod types;

#[cfg(feature = "cuda")]
pub mod cuda;