kimberlite-store 0.6.2

Page-based B+tree projection store with MVCC for Kimberlite
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
//! B+tree implementation with MVCC support.
//!
//! This module implements a disk-based B+tree with:
//! - Point lookups via `get()` and `get_at()`
//! - Range scans via `scan()` and `scan_at()`
//! - MVCC for point-in-time queries
//! - Automatic node splitting on overflow
//!
//! # Architecture
//!
//! The B+tree stores data in pages managed by a `PageCache`. Each page is either:
//! - A leaf node containing key-value pairs with version chains
//! - An internal node containing keys and child pointers
//!
//! All values are stored in leaf nodes, which are linked for efficient range scans.

use std::ops::Range;

use bytes::Bytes;
use kimberlite_types::Offset;

use crate::Key;
use crate::cache::PageCache;
use crate::error::StoreError;
use crate::node::{InternalNode, LeafNode};
use crate::page::PageType;
use crate::types::{BTREE_MIN_KEYS, CRC_SIZE, PAGE_HEADER_SIZE, PAGE_SIZE, PageId};

/// Usable byte budget for items on a leaf page. Everything after the header
/// and before the trailing CRC is available for slot directory + payload;
/// the B+tree splits when a leaf's `size_on_page()` grows past this so a
/// handful of wide rows (Better Auth session rows, e.g.) don't trip
/// `PageOverflow` at `to_page()` time.
const LEAF_PAGE_BYTE_BUDGET: usize = PAGE_SIZE - PAGE_HEADER_SIZE - CRC_SIZE;
use crate::version::RowVersion;

/// Maximum depth of the B+tree (prevents stack overflow in recursive operations).
const MAX_TREE_DEPTH: usize = 32;

/// Metadata for a B+tree index.
///
/// This struct stores just the tree metadata. Operations require passing
/// a mutable reference to the page cache.
#[derive(Debug, Clone, Default)]
pub struct BTreeMeta {
    /// Root page ID (None if tree is empty).
    pub root: Option<PageId>,
    /// Current height of the tree (1 = just root leaf).
    pub height: usize,
}

impl BTreeMeta {
    /// Creates metadata for a new empty tree.
    #[allow(dead_code)]
    pub fn new() -> Self {
        Self::default()
    }

    /// Creates metadata with an existing root.
    #[allow(dead_code)]
    pub fn with_root(root: PageId, height: usize) -> Self {
        Self {
            root: Some(root),
            height,
        }
    }
}

/// B+tree operations that work with a page cache.
///
/// This struct provides the actual B+tree operations. It's designed to be
/// used transiently - create it, perform operations, then discard.
pub struct BTree<'a> {
    meta: &'a mut BTreeMeta,
    cache: &'a mut PageCache,
}

impl<'a> BTree<'a> {
    /// Creates a new `BTree` handle for operations.
    pub fn new(meta: &'a mut BTreeMeta, cache: &'a mut PageCache) -> Self {
        Self { meta, cache }
    }

    /// Returns the root page ID.
    #[allow(dead_code)]
    pub fn root(&self) -> Option<PageId> {
        self.meta.root
    }

    /// Returns the height of the tree.
    #[allow(dead_code)]
    pub fn height(&self) -> usize {
        self.meta.height
    }

    /// Gets the current value for a key.
    pub fn get(&mut self, key: &Key) -> Result<Option<Bytes>, StoreError> {
        let Some(root) = self.meta.root else {
            return Ok(None);
        };

        let leaf_id = self.find_leaf(root, key, 0)?;
        let page = self
            .cache
            .get(leaf_id)?
            .ok_or(StoreError::PageNotFound(leaf_id))?;
        let leaf = LeafNode::from_page(page)?;

        if let Some(entry) = leaf.get(key) {
            if let Some(version) = entry.versions.current() {
                return Ok(Some(version.data.clone()));
            }
        }

        Ok(None)
    }

    /// Gets the value visible at a specific position.
    pub fn get_at(&mut self, key: &Key, pos: Offset) -> Result<Option<Bytes>, StoreError> {
        let Some(root) = self.meta.root else {
            return Ok(None);
        };

        let leaf_id = self.find_leaf(root, key, 0)?;
        let page = self
            .cache
            .get(leaf_id)?
            .ok_or(StoreError::PageNotFound(leaf_id))?;
        let leaf = LeafNode::from_page(page)?;

        if let Some(entry) = leaf.get(key) {
            if let Some(version) = entry.versions.at(pos) {
                return Ok(Some(version.data.clone()));
            }
        }

        Ok(None)
    }

    /// Scans a range of keys, returning current values.
    ///
    /// Inverted ranges (`start > end`) return empty. In debug builds
    /// the assertion below surfaces inverted ranges loudly so planner
    /// bugs producing them are caught during development; release
    /// builds defensively return empty via `LeafNode::range`'s clamp.
    /// The assertion is disabled under `cfg(fuzzing)` because
    /// `fuzz_sql_norec` can feed the SQL planner inputs that legitimately
    /// produce an inverted range — the defensive clamp is the intended
    /// behaviour there, and the assertion would otherwise mask all other
    /// bugs beyond it. The underlying planner issue is tracked in
    /// ROADMAP.md under "SQL planner — prevent inverted range output".
    pub fn scan(
        &mut self,
        range: Range<Key>,
        limit: usize,
    ) -> Result<Vec<(Key, Bytes)>, StoreError> {
        #[cfg(not(fuzzing))]
        debug_assert!(
            range.start <= range.end,
            "scan called with inverted range: start={:?} > end={:?}",
            range.start,
            range.end
        );
        if range.start >= range.end {
            return Ok(Vec::new());
        }
        let Some(root) = self.meta.root else {
            return Ok(Vec::new());
        };

        let mut results = Vec::new();
        let start_leaf_id = self.find_leaf(root, &range.start, 0)?;

        let mut current_leaf_id = Some(start_leaf_id);

        while let Some(leaf_id) = current_leaf_id {
            if results.len() >= limit {
                break;
            }

            let page = self
                .cache
                .get(leaf_id)?
                .ok_or(StoreError::PageNotFound(leaf_id))?;
            let leaf = LeafNode::from_page(page)?;

            for entry in leaf.range(&range.start, &range.end) {
                if entry.key >= range.end {
                    current_leaf_id = None;
                    break;
                }

                if let Some(version) = entry.versions.current() {
                    results.push((entry.key.clone(), version.data.clone()));
                    if results.len() >= limit {
                        break;
                    }
                }
            }

            if current_leaf_id.is_some() {
                current_leaf_id = leaf.next_leaf;
            }
        }

        Ok(results)
    }

    /// Scans a range of keys at a specific position.
    ///
    /// Inverted ranges (`start > end`) return empty. See `scan()` for
    /// the debug_assert + defensive-clamp rationale.
    pub fn scan_at(
        &mut self,
        range: Range<Key>,
        limit: usize,
        pos: Offset,
    ) -> Result<Vec<(Key, Bytes)>, StoreError> {
        debug_assert!(
            range.start <= range.end,
            "scan_at called with inverted range: start={:?} > end={:?}",
            range.start,
            range.end
        );
        if range.start >= range.end {
            return Ok(Vec::new());
        }
        let Some(root) = self.meta.root else {
            return Ok(Vec::new());
        };

        let mut results = Vec::new();
        let start_leaf_id = self.find_leaf(root, &range.start, 0)?;

        let mut current_leaf_id = Some(start_leaf_id);

        while let Some(leaf_id) = current_leaf_id {
            if results.len() >= limit {
                break;
            }

            let page = self
                .cache
                .get(leaf_id)?
                .ok_or(StoreError::PageNotFound(leaf_id))?;
            let leaf = LeafNode::from_page(page)?;

            for entry in leaf.range(&range.start, &range.end) {
                if entry.key >= range.end {
                    current_leaf_id = None;
                    break;
                }

                if let Some(version) = entry.versions.at(pos) {
                    results.push((entry.key.clone(), version.data.clone()));
                    if results.len() >= limit {
                        break;
                    }
                }
            }

            if current_leaf_id.is_some() {
                current_leaf_id = leaf.next_leaf;
            }
        }

        Ok(results)
    }

    /// Inserts or updates a key-value pair.
    pub fn put(&mut self, key: Key, value: Bytes, pos: Offset) -> Result<(), StoreError> {
        let version = RowVersion::new(pos, value);

        match self.meta.root {
            None => {
                // Create new root leaf
                let page_id = self.cache.allocate(PageType::Leaf)?;
                let page = self.cache.get_mut(page_id)?.unwrap();
                let mut leaf = LeafNode::new();
                leaf.insert(key, version);
                leaf.to_page(page)?;

                self.meta.root = Some(page_id);
                self.meta.height = 1;
            }
            Some(root) => {
                // Insert into existing tree
                if let Some((split_key, new_child)) =
                    self.insert_recursive(root, key, version, 0)?
                {
                    // Root split - create new root
                    let new_root_id = self.cache.allocate(PageType::Internal)?;
                    let page = self.cache.get_mut(new_root_id)?.unwrap();
                    let internal = InternalNode::from_split(root, split_key, new_child);
                    internal.to_page(page)?;

                    self.meta.root = Some(new_root_id);
                    self.meta.height += 1;
                }
            }
        }

        Ok(())
    }

    /// Deletes a key by marking its current version as deleted.
    pub fn delete(&mut self, key: &Key, pos: Offset) -> Result<bool, StoreError> {
        let Some(root) = self.meta.root else {
            return Ok(false);
        };

        let leaf_id = self.find_leaf(root, key, 0)?;
        let page = self
            .cache
            .get_mut(leaf_id)?
            .ok_or(StoreError::PageNotFound(leaf_id))?;
        let mut leaf = LeafNode::from_page(page)?;

        let deleted = leaf.delete(key, pos);
        if deleted {
            leaf.to_page(page)?;
        }

        Ok(deleted)
    }

    /// Finds the leaf page containing the key.
    fn find_leaf(
        &mut self,
        page_id: PageId,
        key: &Key,
        depth: usize,
    ) -> Result<PageId, StoreError> {
        if depth >= MAX_TREE_DEPTH {
            return Err(StoreError::BTreeInvariant("tree too deep".into()));
        }

        let page = self
            .cache
            .get(page_id)?
            .ok_or(StoreError::PageNotFound(page_id))?;

        match page.page_type() {
            PageType::Leaf => Ok(page_id),
            PageType::Internal => {
                let internal = InternalNode::from_page(page)?;
                let child_id = internal.find_child(key);
                self.find_leaf(child_id, key, depth + 1)
            }
            PageType::Free => Err(StoreError::BTreeInvariant(
                "hit free page during search".into(),
            )),
        }
    }

    /// Recursively inserts into the tree, returning split info if the node split.
    fn insert_recursive(
        &mut self,
        page_id: PageId,
        key: Key,
        version: RowVersion,
        depth: usize,
    ) -> Result<Option<(Key, PageId)>, StoreError> {
        if depth >= MAX_TREE_DEPTH {
            return Err(StoreError::BTreeInvariant("tree too deep".into()));
        }

        let page = self
            .cache
            .get(page_id)?
            .ok_or(StoreError::PageNotFound(page_id))?;
        let page_type = page.page_type();

        match page_type {
            PageType::Leaf => self.insert_into_leaf(page_id, key, version),
            PageType::Internal => {
                let page = self.cache.get(page_id)?.unwrap();
                let internal = InternalNode::from_page(page)?;
                let child_id = internal.find_child(&key);
                drop(internal);

                // Recursively insert into child
                if let Some((child_split_key, new_child_id)) =
                    self.insert_recursive(child_id, key, version, depth + 1)?
                {
                    // Child split, insert the new key into this internal node
                    self.insert_into_internal(page_id, child_split_key, new_child_id)
                } else {
                    Ok(None)
                }
            }
            PageType::Free => Err(StoreError::BTreeInvariant(
                "hit free page during insert".into(),
            )),
        }
    }

    /// Inserts into a leaf node, splitting if necessary.
    fn insert_into_leaf(
        &mut self,
        page_id: PageId,
        key: Key,
        version: RowVersion,
    ) -> Result<Option<(Key, PageId)>, StoreError> {
        let page = self
            .cache
            .get_mut(page_id)?
            .ok_or(StoreError::PageNotFound(page_id))?;
        let mut leaf = LeafNode::from_page(page)?;

        leaf.insert(key, version);

        // Split on either count or byte-size threshold. The byte-size check
        // catches wide rows (sessions with long JWTs, JSON-metadata-heavy
        // org rows) that otherwise fit fewer than `BTREE_MIN_KEYS * 2` to
        // a page and would trip `PageOverflow` on `to_page()`.
        if leaf.len() > BTREE_MIN_KEYS * 2 || leaf.size_on_page() > LEAF_PAGE_BYTE_BUDGET {
            // Split the leaf
            let (split_key, mut right_leaf) = leaf.split();

            // Allocate new page for right half
            let right_page_id = self.cache.allocate(PageType::Leaf)?;

            // Link leaves
            right_leaf.next_leaf = leaf.next_leaf;
            leaf.next_leaf = Some(right_page_id);

            // Write both leaves
            let left_page = self.cache.get_mut(page_id)?.unwrap();
            leaf.to_page(left_page)?;

            let right_page = self.cache.get_mut(right_page_id)?.unwrap();
            right_leaf.to_page(right_page)?;

            Ok(Some((split_key, right_page_id)))
        } else {
            // No split needed
            leaf.to_page(page)?;
            Ok(None)
        }
    }

    /// Inserts into an internal node, splitting if necessary.
    fn insert_into_internal(
        &mut self,
        page_id: PageId,
        key: Key,
        child_id: PageId,
    ) -> Result<Option<(Key, PageId)>, StoreError> {
        let page = self
            .cache
            .get_mut(page_id)?
            .ok_or(StoreError::PageNotFound(page_id))?;
        let mut internal = InternalNode::from_page(page)?;

        internal.insert(key, child_id);

        // Check if we need to split
        if internal.key_count() > BTREE_MIN_KEYS * 2 {
            // Split the internal node
            let (split_key, right_internal) = internal.split();

            // Allocate new page for right half
            let right_page_id = self.cache.allocate(PageType::Internal)?;

            // Write both nodes
            let left_page = self.cache.get_mut(page_id)?.unwrap();
            internal.to_page(left_page)?;

            let right_page = self.cache.get_mut(right_page_id)?.unwrap();
            right_internal.to_page(right_page)?;

            Ok(Some((split_key, right_page_id)))
        } else {
            // No split needed
            internal.to_page(page)?;
            Ok(None)
        }
    }
}

#[cfg(test)]
mod btree_tests {
    use super::*;
    use tempfile::tempdir;

    fn create_cache() -> (tempfile::TempDir, PageCache) {
        let dir = tempdir().unwrap();
        let path = dir.path().join("btree_test.db");
        let cache = PageCache::open(&path, Some(100)).unwrap();
        (dir, cache)
    }

    #[test]
    fn test_empty_tree() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();
        let mut tree = BTree::new(&mut meta, &mut cache);

        assert!(tree.root().is_none());
        assert_eq!(tree.get(&Key::from("key")).unwrap(), None);
    }

    #[test]
    fn test_single_insert_and_get() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();

        {
            let mut tree = BTree::new(&mut meta, &mut cache);
            tree.put(Key::from("hello"), Bytes::from("world"), Offset::new(1))
                .unwrap();
        }

        {
            let mut tree = BTree::new(&mut meta, &mut cache);
            assert!(tree.root().is_some());
            assert_eq!(
                tree.get(&Key::from("hello")).unwrap(),
                Some(Bytes::from("world"))
            );
            assert_eq!(tree.get(&Key::from("missing")).unwrap(), None);
        }
    }

    #[test]
    fn test_multiple_inserts() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();

        {
            let mut tree = BTree::new(&mut meta, &mut cache);
            for i in 0_u64..10 {
                let key = Key::from(format!("key{i:02}"));
                let value = Bytes::from(format!("value{i}"));
                tree.put(key, value, Offset::new(i)).unwrap();
            }
        }

        {
            let mut tree = BTree::new(&mut meta, &mut cache);
            for i in 0..10 {
                let key = Key::from(format!("key{i:02}"));
                let expected = Bytes::from(format!("value{i}"));
                assert_eq!(tree.get(&key).unwrap(), Some(expected));
            }
        }
    }

    #[test]
    fn test_mvcc_get_at() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();

        let key = Key::from("mvcc-key");

        {
            let mut tree = BTree::new(&mut meta, &mut cache);

            // Insert v1 at position 1
            tree.put(key.clone(), Bytes::from("v1"), Offset::new(1))
                .unwrap();

            // Insert v2 at position 5
            tree.put(key.clone(), Bytes::from("v2"), Offset::new(5))
                .unwrap();

            // Insert v3 at position 10
            tree.put(key.clone(), Bytes::from("v3"), Offset::new(10))
                .unwrap();

            // Current should be v3
            assert_eq!(tree.get(&key).unwrap(), Some(Bytes::from("v3")));

            // Point-in-time queries
            assert_eq!(tree.get_at(&key, Offset::new(0)).unwrap(), None);
            assert_eq!(
                tree.get_at(&key, Offset::new(1)).unwrap(),
                Some(Bytes::from("v1"))
            );
            assert_eq!(
                tree.get_at(&key, Offset::new(3)).unwrap(),
                Some(Bytes::from("v1"))
            );
            assert_eq!(
                tree.get_at(&key, Offset::new(5)).unwrap(),
                Some(Bytes::from("v2"))
            );
            assert_eq!(
                tree.get_at(&key, Offset::new(8)).unwrap(),
                Some(Bytes::from("v2"))
            );
            assert_eq!(
                tree.get_at(&key, Offset::new(10)).unwrap(),
                Some(Bytes::from("v3"))
            );
            assert_eq!(
                tree.get_at(&key, Offset::new(100)).unwrap(),
                Some(Bytes::from("v3"))
            );
        }
    }

    #[test]
    fn test_delete() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();

        {
            let mut tree = BTree::new(&mut meta, &mut cache);

            tree.put(Key::from("key"), Bytes::from("value"), Offset::new(1))
                .unwrap();
            assert_eq!(
                tree.get(&Key::from("key")).unwrap(),
                Some(Bytes::from("value"))
            );

            tree.delete(&Key::from("key"), Offset::new(5)).unwrap();
            assert_eq!(tree.get(&Key::from("key")).unwrap(), None);

            // But visible at old positions
            assert_eq!(
                tree.get_at(&Key::from("key"), Offset::new(3)).unwrap(),
                Some(Bytes::from("value"))
            );
        }
    }

    #[test]
    fn test_scan_range() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();

        {
            let mut tree = BTree::new(&mut meta, &mut cache);
            for i in 0_u64..20 {
                let key = Key::from(format!("key{i:02}"));
                let value = Bytes::from(format!("value{i}"));
                tree.put(key, value, Offset::new(i)).unwrap();
            }

            let results = tree
                .scan(Key::from("key05")..Key::from("key10"), 100)
                .unwrap();

            assert_eq!(results.len(), 5);
            assert_eq!(results[0].0, Key::from("key05"));
            assert_eq!(results[4].0, Key::from("key09"));
        }
    }

    #[test]
    fn test_node_splitting() {
        let (_dir, mut cache) = create_cache();
        let mut meta = BTreeMeta::new();

        {
            let mut tree = BTree::new(&mut meta, &mut cache);

            // Insert enough keys to trigger splits
            for i in 0_u64..50 {
                let key = Key::from(format!("key{i:03}"));
                let value = Bytes::from(format!("value{i}"));
                tree.put(key, value, Offset::new(i)).unwrap();
            }

            // Tree should have grown
            assert!(tree.height() >= 1);

            // All keys should still be findable
            for i in 0..50 {
                let key = Key::from(format!("key{i:03}"));
                let expected = Bytes::from(format!("value{i}"));
                assert_eq!(
                    tree.get(&key).unwrap(),
                    Some(expected),
                    "failed for key{i:03}"
                );
            }
        }
    }
}