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//! Floating point k-d tree, for use when the co-ordinates of the points being stored in the tree
//! are floats. f64 or f32 are supported currently.
use az::{Az, Cast};
use divrem::DivCeil;
use num_traits::Float;
use std::cmp::PartialEq;
use std::fmt::Debug;
#[cfg(feature = "serialize")]
use crate::custom_serde::*;
use crate::types::{Content, Index};
#[cfg(feature = "serialize")]
use serde::{Deserialize, Serialize};
/// Axis trait represents the traits that must be implemented
/// by the type that is used as the first generic parameter, `A`,
/// on the float [`KdTree`]. This will be [`f64`] or [`f32`].
pub trait Axis: Float + Default + Debug + Copy + Sync {
/// returns absolute diff between two values of a type implementing this trait
fn saturating_dist(self, other: Self) -> Self;
/// used within query functions to update rd from old and new off
fn rd_update(self, old_off: Self, new_off: Self) -> Self;
}
impl<T: Float + Default + Debug + Copy + Sync> Axis for T {
fn saturating_dist(self, other: Self) -> Self {
(self - other).abs()
}
fn rd_update(self, old_off: Self, new_off: Self) -> Self {
self + new_off * new_off - old_off * old_off
}
}
// TODO: make LeafNode and StemNode `pub(crate)` so that they,
// and their Archived types, don't show up in docs.
// This is tricky due to encountering this problem:
// https://github.com/rkyv/rkyv/issues/275
/* #[cfg_attr(
feature = "serialize_rkyv",
omit_bounds
)] */
/// Floating point k-d tree
///
/// For use when the co-ordinates of the points being stored in the tree
/// on the float [`KdTree`]. This will be [`f64`] or [`f32`].
#[cfg_attr(feature = "serialize", derive(Serialize, Deserialize))]
#[cfg_attr(
feature = "serialize_rkyv",
derive(rkyv::Archive, rkyv::Serialize, rkyv::Deserialize)
)]
#[derive(Clone, Debug, PartialEq)]
pub struct KdTree<A: Copy + Default, T: Copy + Default, const K: usize, const B: usize, IDX> {
pub(crate) leaves: Vec<LeafNode<A, T, K, B, IDX>>,
pub(crate) stems: Vec<StemNode<A, K, IDX>>,
pub(crate) root_index: IDX,
pub(crate) size: T,
}
#[doc(hidden)]
#[cfg_attr(feature = "serialize", derive(Serialize, Deserialize))]
#[cfg_attr(
feature = "serialize_rkyv",
derive(rkyv::Archive, rkyv::Serialize, rkyv::Deserialize)
)]
#[derive(Clone, Debug, PartialEq)]
pub struct StemNode<A: Copy + Default, const K: usize, IDX> {
pub(crate) left: IDX,
pub(crate) right: IDX,
pub(crate) split_val: A,
}
#[doc(hidden)]
#[cfg_attr(feature = "serialize", derive(Serialize, Deserialize))]
#[cfg_attr(
feature = "serialize_rkyv",
derive(rkyv::Archive, rkyv::Serialize, rkyv::Deserialize)
)]
#[derive(Clone, Debug, PartialEq)]
pub struct LeafNode<A: Copy + Default, T: Copy + Default, const K: usize, const B: usize, IDX> {
#[cfg_attr(feature = "serialize", serde(with = "array_of_arrays"))]
#[cfg_attr(
feature = "serialize",
serde(bound(serialize = "A: Serialize", deserialize = "A: Deserialize<'de>"))
)]
// TODO: Refactor content_points to be [[A; B]; K] to see if this helps vectorisation
pub(crate) content_points: [[A; K]; B],
#[cfg_attr(feature = "serialize", serde(with = "array"))]
#[cfg_attr(
feature = "serialize",
serde(bound(
serialize = "A: Serialize, T: Serialize",
deserialize = "A: Deserialize<'de>, T: Deserialize<'de> + Copy + Default"
))
)]
pub(crate) content_items: [T; B],
pub(crate) size: IDX,
}
impl<A: Copy + Default, T: Copy + Default, const K: usize, const B: usize, IDX>
LeafNode<A, T, K, B, IDX>
where
A: Axis,
T: Content,
IDX: Index<T = IDX>,
{
pub(crate) fn new() -> Self {
Self {
content_points: [[A::zero(); K]; B],
content_items: [T::zero(); B],
size: IDX::zero(),
}
}
}
impl<A, T, const K: usize, const B: usize, IDX> Default for KdTree<A, T, K, B, IDX>
where
A: Axis,
T: Content,
IDX: Index<T = IDX>,
usize: Cast<IDX>,
{
fn default() -> Self {
Self::new()
}
}
impl<A, T, const K: usize, const B: usize, IDX> KdTree<A, T, K, B, IDX>
where
A: Axis,
T: Content,
IDX: Index<T = IDX>,
usize: Cast<IDX>,
{
/// Creates a new float KdTree.
///
/// Capacity is set by default to 10x the bucket size (32 in this case).
///
/// # Examples
///
/// ```rust
/// use kiddo::float::kdtree::KdTree;
///
/// let mut tree: KdTree<f64, u32, 3, 32, u32> = KdTree::new();
///
/// tree.add(&[1.0, 2.0, 5.0], 100);
///
/// assert_eq!(tree.size(), 1);
/// ```
#[inline]
pub fn new() -> Self {
KdTree::with_capacity(B * 10)
}
/// Creates a new float KdTree and reserve capacity for a specific number of items.
///
/// # Examples
///
/// ```rust
/// use kiddo::float::kdtree::KdTree;
///
/// let mut tree: KdTree<f64, u32, 3, 32, u32> = KdTree::with_capacity(1_000_000);
///
/// tree.add(&[1.0, 2.0, 5.0], 100);
///
/// assert_eq!(tree.size(), 1);
/// ```
#[inline]
pub fn with_capacity(capacity: usize) -> Self {
assert!(capacity <= <IDX as Index>::capacity_with_bucket_size(B));
let mut tree = Self {
size: T::zero(),
stems: Vec::with_capacity(capacity.max(1).ilog2() as usize),
leaves: Vec::with_capacity(DivCeil::div_ceil(capacity, B.az::<usize>())),
root_index: <IDX as Index>::leaf_offset(),
};
tree.leaves.push(LeafNode::new());
tree
}
}
impl<A: Axis, T: Content, const K: usize, const B: usize, IDX: Index<T = IDX>> From<&Vec<[A; K]>>
for KdTree<A, T, K, B, IDX>
where
usize: Cast<IDX>,
usize: Cast<T>,
{
fn from(vec: &Vec<[A; K]>) -> Self {
let mut tree: KdTree<A, T, K, B, IDX> = KdTree::with_capacity(vec.len());
vec.iter().enumerate().for_each(|(idx, pos)| {
tree.add(pos, idx.az::<T>());
});
tree
}
}
macro_rules! generate_common_methods {
($kdtree:ident) => {
/// Returns the current number of elements stored in the tree
///
/// # Examples
///
/// ```rust
/// use kiddo::float::kdtree::KdTree;
///
/// let mut tree: KdTree<f64, u32, 3, 32, u32> = KdTree::new();
///
/// tree.add(&[1.0, 2.0, 5.0], 100);
/// tree.add(&[1.1, 2.1, 5.1], 101);
///
/// assert_eq!(tree.size(), 2);
/// ```
#[inline]
pub fn size(&self) -> T {
self.size
}
};
}
impl<A, T, const K: usize, const B: usize, IDX> KdTree<A, T, K, B, IDX>
where
A: Axis,
T: Content,
IDX: Index<T = IDX>,
usize: Cast<IDX>,
{
generate_common_methods!(KdTree);
}
#[cfg(feature = "rkyv")]
impl<
A: Axis + rkyv::Archive<Archived = A>,
T: Content + rkyv::Archive<Archived = T>,
const K: usize,
const B: usize,
IDX: Index<T = IDX> + rkyv::Archive<Archived = IDX>,
> ArchivedKdTree<A, T, K, B, IDX>
where
usize: Cast<IDX>,
{
generate_common_methods!(ArchivedKdTree);
}
#[cfg(test)]
mod tests {
use crate::float::kdtree::KdTree;
type AX = f64;
#[test]
fn it_can_be_constructed_with_new() {
let tree: KdTree<AX, u32, 4, 32, u32> = KdTree::new();
assert_eq!(tree.size(), 0);
}
#[test]
fn it_can_be_constructed_with_a_defined_capacity() {
let tree: KdTree<AX, u32, 4, 32, u32> = KdTree::with_capacity(10);
assert_eq!(tree.size(), 0);
}
#[test]
fn it_can_be_constructed_with_a_capacity_of_zero() {
let tree: KdTree<AX, u32, 4, 32, u32> = KdTree::with_capacity(0);
assert_eq!(tree.size(), 0);
}
// #[cfg(feature = "serialize")]
// #[test]
// fn can_serde() {
// let mut tree: KdTree<u16, u32, 4, 32, u32> = KdTree::new();
//
// let content_to_add: [(PT, T); 16] = [
// ([9f32, 0f32, 9f32, 0f32], 9),
// ([4f32, 500f32, 4f32, 500f32], 4),
// ([12f32, -300f32, 12f32, -300f32], 12),
// ([7f32, 200f32, 7f32, 200f32], 7),
// ([13f32, -400f32, 13f32, -400f32], 13),
// ([6f32, 300f32, 6f32, 300f32], 6),
// ([2f32, 700f32, 2f32, 700f32], 2),
// ([14f32, -500f32, 14f32, -500f32], 14),
// ([3f32, 600f32, 3f32, 600f32], 3),
// ([10f32, -100f32, 10f32, -100f32], 10),
// ([16f32, -700f32, 16f32, -700f32], 16),
// ([1f32, 800f32, 1f32, 800f32], 1),
// ([15f32, -600f32, 15f32, -600f32], 15),
// ([5f32, 400f32, 5f32, 400f32], 5),
// ([8f32, 100f32, 8f32, 100f32], 8),
// ([11f32, -200f32, 11f32, -200f32], 11),
// ];
//
// for (point, item) in content_to_add {
// tree.add(&point, item);
// }
// assert_eq!(tree.size(), 16);
//
// let serialized = serde_json::to_string(&tree).unwrap();
// println!("JSON: {:?}", &serialized);
//
// let deserialized: KdTree = serde_json::from_str(&serialized).unwrap();
// assert_eq!(tree, deserialized);
// }
}