k2tools 0.1.0

Rust CLI toolkit for working with kraken2 outputs
Documentation 
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name: Check and Test

on:
  push:
    branches:
      - main
  pull_request:

env:
  CARGO_TERM_COLOR: always
  CARGO_INCREMENTAL: 0
  SCCACHE_GHA_ENABLED: "true"
  RUSTC_WRAPPER: "sccache"

jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@v4
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@stable
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@v0.0.9
      - name: Install nextest
        uses: taiki-e/install-action@nextest
      - name: Unit tests
        run: cargo ci-test

  lint:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@v4
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@stable
        with:
          components: clippy
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@v0.0.9
      - name: Clippy check
        run: cargo ci-lint

  format:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@v4
      - name: Install Rust toolchain
        uses: dtolnay/rust-toolchain@stable
        with:
          components: rustfmt
      - name: Set up compilation cache (sccache)
        uses: mozilla-actions/sccache-action@v0.0.9
      - name: Rustfmt check
        run: cargo ci-fmt