jean 0.1.0

Computational biology utility library for Rust featuring sequence alignment, genome annotation, and I/O of biological files
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54

#[cfg(feature = "jean_macros")]
extern crate jean_macros;

#[cfg(feature = "jean_io")]
extern crate jean_io;

#[cfg(feature = "jean_alignment")]
extern crate jean_alignment;

#[cfg(feature = "jean_blosum")]
extern crate jean_blosum;

/* ---- BEGIN CRATE ROOT ---- */
pub use jean_core::sequence::*;

mod macros;

pub use macros::*;
/* ---- END CRATE ROOT ---- */

/// Trait definitions
pub mod prelude {
  pub use jean_core::prelude::*;
  pub use jean_cut::prelude::*;

  #[cfg(feature = "jean_io")]
  pub use jean_io::prelude::*;

  #[cfg(feature = "jean_alignment")]
  pub use jean_alignment::prelude::*;
}

/// Codon usage tables (codon frequency tables)
pub mod cut {
  pub use jean_cut::cut::*;
}

#[cfg(feature = "jean_io")]
/// I/O of common biological files
pub mod io {
  pub use jean_io::formats::*;
}

#[cfg(feature = "jean_alignment")]
/// Sequence alignment tools
pub mod alignment {
  pub use jean_alignment::alignment::*;
}

#[cfg(feature = "jean_blosum")]
/// BLOSUM substitution matrices
pub mod blosum {
  pub use jean_blosum::*;
}