innate 0.1.12

Innate — self-growing procedural knowledge layer for AI agents
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
use super::*;

#[test]
fn evolve_preserves_replayable_usage_facts_and_counts() {
    let (kb, _file) = tmp_kb();
    let chunk_id = kb
        .add(
            "evolve count conservation",
            "note",
            Some("count"),
            None,
            "manual",
            None,
        )
        .unwrap();
    let trace_id = attributed_trace(&kb, &chunk_id);
    kb.record(RecordParams {
        trace_id: &trace_id,
        query: None,
        output: None,
        output_summary: Some("completed"),
        outcome: Some("ok"),
        used: Some(std::slice::from_ref(&chunk_id)),
        feedback_up: None,
        feedback_down: None,
        nomination: None,
        priority: 0,
        source: "sdk",
        ..Default::default()
    })
    .unwrap();
    kb.storage
        .conn_execute(
            "UPDATE episodic_log SET distill_state='discarded' WHERE trace_id=?",
            rusqlite::params![trace_id],
        )
        .unwrap();

    kb.evolve("manual").unwrap();
    kb.builtin_curate_impl(&CurateScope::default()).unwrap();

    let chunk = kb.storage.get_chunk(&chunk_id).unwrap().unwrap();
    assert_eq!(chunk["selected_count"].as_i64(), Some(1));
    assert_eq!(chunk["used_count"].as_i64(), Some(1));
    assert_eq!(chunk["used_success_count"].as_i64(), Some(1));
    let retained = kb
        .storage
        .query_chunks_params(
            "SELECT COUNT(*) AS cnt FROM usage_trace
             WHERE trace_id=? AND event IN ('selected','used','task_ok')",
            rusqlite::params![trace_id],
        )
        .unwrap();
    assert_eq!(retained[0]["cnt"].as_i64(), Some(3));
}

#[test]
fn feedback_can_be_corrected_after_successful_evolve() {
    let (kb, _file) = tmp_kb();
    let chunk_id = kb
        .add(
            "post evolve correction",
            "note",
            Some("correction"),
            None,
            "manual",
            None,
        )
        .unwrap();
    let initial = kb.storage.get_chunk(&chunk_id).unwrap().unwrap()["confidence"]
        .as_f64()
        .unwrap();
    let trace_id = attributed_trace(&kb, &chunk_id);
    kb.record(RecordParams {
        trace_id: &trace_id,
        query: None,
        output: None,
        output_summary: None,
        outcome: None,
        used: None,
        feedback_up: None,
        feedback_down: Some(std::slice::from_ref(&chunk_id)),
        nomination: None,
        priority: 0,
        source: "sdk",
        ..Default::default()
    })
    .unwrap();
    kb.storage
        .conn_execute(
            "UPDATE episodic_log SET distill_state='discarded' WHERE trace_id=?",
            rusqlite::params![trace_id],
        )
        .unwrap();

    kb.evolve("manual").unwrap();
    kb.record(RecordParams {
        trace_id: &trace_id,
        query: None,
        output: None,
        output_summary: None,
        outcome: None,
        used: None,
        feedback_up: Some(std::slice::from_ref(&chunk_id)),
        feedback_down: None,
        nomination: None,
        priority: 0,
        source: "sdk",
        ..Default::default()
    })
    .unwrap();

    let chunk = kb.storage.get_chunk(&chunk_id).unwrap().unwrap();
    assert_eq!(chunk["confidence_base"].as_f64(), Some(initial));
    assert!(chunk["confidence"].as_f64().unwrap() > initial);
    let evidence = kb
        .storage
        .query_chunks_params(
            "SELECT kind FROM confidence_evidence WHERE trace_id=? AND chunk_id=?",
            rusqlite::params![trace_id, chunk_id],
        )
        .unwrap();
    assert_eq!(evidence.len(), 1);
    assert_eq!(evidence[0]["kind"].as_str(), Some("feedback_up"));
}

#[test]
fn completed_trace_without_outcome_reaches_a_terminal_distill_state() {
    let (kb, _file) = tmp_kb();
    let trace_id = crate::utils::gen_uuid();
    kb.record(RecordParams {
        trace_id: &trace_id,
        query: Some("completed without outcome"),
        output: None,
        output_summary: Some("reusable material"),
        outcome: None,
        used: None,
        used_attribution: "explicit",
        used_complete: Some(true),
        feedback_up: None,
        feedback_down: None,
        feedback_kind: "user",
        feedback_actor: None,
        feedback_reason: None,
        nomination: None,
        priority: 0,
        task_state: Some("completed"),
        source: "sdk",
    })
    .unwrap();

    let log = kb.storage.get_episodic_log(&trace_id).unwrap().unwrap();
    assert_eq!(log["task_state"].as_str(), Some("completed"));
    assert_eq!(log["distill_state"].as_str(), Some("new"));
    assert!(log["completed_at"].as_str().is_some());
}

#[test]
fn usage_annotation_rate_excludes_non_completed_traces() {
    let (kb, _file) = tmp_kb();
    let chunk_id = kb
        .add("metric attribution", "note", None, None, "manual", None)
        .unwrap();
    let running_trace = attributed_trace(&kb, &chunk_id);
    kb.record(RecordParams {
        trace_id: &running_trace,
        query: None,
        output: None,
        output_summary: None,
        outcome: None,
        used: Some(&[chunk_id]),
        used_attribution: "explicit",
        used_complete: Some(true),
        feedback_up: None,
        feedback_down: None,
        feedback_kind: "user",
        feedback_actor: None,
        feedback_reason: None,
        nomination: None,
        priority: 0,
        task_state: Some("running"),
        source: "sdk",
    })
    .unwrap();
    kb.record(RecordParams {
        trace_id: &crate::utils::gen_uuid(),
        query: Some("completed"),
        output: None,
        output_summary: None,
        outcome: Some("ok"),
        used: None,
        feedback_up: None,
        feedback_down: None,
        nomination: None,
        priority: 0,
        source: "sdk",
        ..Default::default()
    })
    .unwrap();

    let inspect = kb.inspect().unwrap();
    assert_eq!(
        inspect["feedback_loop"]["usage_annotation_rate"].as_f64(),
        Some(0.0)
    );
}

#[test]
fn migration_4_12_baselines_exclude_retained_usage_facts() {
    let file = NamedTempFile::new().unwrap();
    let conn = rusqlite::Connection::open(file.path()).unwrap();
    conn.execute_batch(
        "CREATE TABLE meta (key TEXT PRIMARY KEY, value TEXT NOT NULL);
         INSERT INTO meta VALUES ('schema_version', '4.11');
         CREATE TABLE chunks (
           id TEXT PRIMARY KEY,
           confidence REAL NOT NULL,
           selected_count INTEGER NOT NULL,
           used_count INTEGER NOT NULL,
           used_success_count INTEGER NOT NULL,
           last_used_at TEXT
         );
         INSERT INTO chunks VALUES
           ('c1', 0.7, 5, 4, 3, '2026-01-01T00:00:00.000Z');
         CREATE TABLE usage_trace (
           trace_id TEXT NOT NULL,
           chunk_id TEXT,
           event TEXT NOT NULL,
           ts TEXT NOT NULL
         );
         INSERT INTO usage_trace VALUES
           ('t1', 'c1', 'selected', '2026-01-01T00:00:00.000Z'),
           ('t2', 'c1', 'selected', '2026-01-01T00:00:00.000Z'),
           ('t1', 'c1', 'used', '2026-01-01T00:00:00.000Z'),
           ('t1', NULL, 'task_ok', '2026-01-01T00:00:00.000Z');
         CREATE TABLE episodic_log (
           id TEXT, trace_id TEXT, outcome TEXT,
           distill_state TEXT,
           distill_prompt_tokens INTEGER,
           distill_completion_tokens INTEGER,
           distill_accounted_at TEXT
         );
         INSERT INTO episodic_log VALUES
           ('l1', 't1', 'ok', 'distilled', NULL, NULL, NULL);
         CREATE TABLE feedback_events (
           chunk_id TEXT, context_key TEXT, signal TEXT
         );
         CREATE TABLE chunk_context_stats (
           chunk_id TEXT, context_key TEXT,
           success_count INTEGER, failure_count INTEGER,
           positive_feedback INTEGER, negative_feedback INTEGER
         );
         CREATE TABLE governance_proposals (id TEXT);
         CREATE TABLE evolve_requests (
           id TEXT, reason TEXT, state TEXT, requested_at TEXT
         );",
    )
    .unwrap();
    drop(conn);

    assert_eq!(
        crate::migrate::run_migrations(file.path()).unwrap(),
        vec!["4.11→4.12", "4.12→4.13", "4.13→4.14"]
    );
    let conn = rusqlite::Connection::open(file.path()).unwrap();
    let values = conn
        .query_row(
            "SELECT selected_count_base, used_count_base,
                    used_success_count_base, last_used_base
             FROM chunks WHERE id='c1'",
            [],
            |row| {
                Ok((
                    row.get::<_, i64>(0)?,
                    row.get::<_, i64>(1)?,
                    row.get::<_, i64>(2)?,
                    row.get::<_, Option<String>>(3)?,
                ))
            },
        )
        .unwrap();
    assert_eq!(values.0, 3);
    assert_eq!(values.1, 3);
    assert_eq!(values.2, 2);
    assert_eq!(values.3, None);
}

#[test]
fn migration_4_14_repairs_existing_4_13_baselines_and_cost_history() {
    let file = NamedTempFile::new().unwrap();
    {
        let kb = KnowledgeBase::open(file.path()).unwrap();
        let chunk_id = kb
            .add("migration repair", "note", None, None, "manual", None)
            .unwrap();
        let trace_id = attributed_trace(&kb, &chunk_id);
        kb.record(RecordParams {
            trace_id: &trace_id,
            query: None,
            output: None,
            output_summary: Some("repair material"),
            outcome: Some("ok"),
            used: Some(std::slice::from_ref(&chunk_id)),
            feedback_up: None,
            feedback_down: None,
            nomination: None,
            priority: 0,
            source: "sdk",
            ..Default::default()
        })
        .unwrap();
        kb.evolve("manual").unwrap();
        kb.storage
            .conn_execute(
                "UPDATE chunks
                 SET selected_count_base=selected_count,
                     used_count_base=used_count,
                     used_success_count_base=used_success_count,
                     last_used_base=last_used_at
                 WHERE id=?",
                rusqlite::params![chunk_id],
            )
            .unwrap();
        kb.storage
            .conn_execute("DROP TABLE distill_token_usage", [])
            .unwrap();
        kb.storage
            .conn_execute("ALTER TABLE chunks DROP COLUMN evidence_cutoff_at", [])
            .unwrap();
        kb.storage.set_meta("schema_version", "4.13").unwrap();
    }

    assert_eq!(
        crate::migrate::run_migrations(file.path()).unwrap(),
        vec!["4.13→4.14"]
    );
    let conn = rusqlite::Connection::open(file.path()).unwrap();
    let values = conn
        .query_row(
            "SELECT selected_count_base, used_count_base,
                    used_success_count_base, last_used_base
             FROM chunks WHERE content='migration repair'",
            [],
            |row| {
                Ok((
                    row.get::<_, i64>(0)?,
                    row.get::<_, i64>(1)?,
                    row.get::<_, i64>(2)?,
                    row.get::<_, Option<String>>(3)?,
                ))
            },
        )
        .unwrap();
    assert_eq!(values, (0, 0, 0, None));
    let cost_rows: i64 = conn
        .query_row("SELECT COUNT(*) FROM distill_token_usage", [], |row| {
            row.get(0)
        })
        .unwrap();
    assert!(cost_rows > 0);
}

#[test]
fn decay_uses_last_decayed_at_for_incremental_delta() {
    // Issue 6 fix: two successive curate runs must not compound decay beyond the 90-day half-life.
    // If last_decayed_at is updated after first decay, the second run decays only the
    // incremental days since then, not the full idle period again.
    let (kb, _file) = tmp_kb();
    let chunk_id = kb
        .add("decay test", "note", Some("t"), None, "manual", None)
        .unwrap();
    // Simulate last_used_at 180 days ago (full 2× half-life idle).
    let old_ts = "2020-01-01T00:00:00.000Z";
    kb.storage
        .conn_execute(
            "UPDATE chunks SET last_used_at=? WHERE id=?",
            rusqlite::params![old_ts, chunk_id],
        )
        .unwrap();

    // First evolve: applies 180-day decay.
    kb.evolve("manual").unwrap();
    let conf1 = kb
        .storage
        .query_chunks_params(
            "SELECT confidence FROM chunks WHERE id=?",
            rusqlite::params![chunk_id],
        )
        .unwrap()[0]["confidence"]
        .as_f64()
        .unwrap();

    // Second evolve (same day): last_decayed_at is today, delta_days ≈ 0 → no further decay.
    kb.evolve("manual").unwrap();
    let conf2 = kb
        .storage
        .query_chunks_params(
            "SELECT confidence FROM chunks WHERE id=?",
            rusqlite::params![chunk_id],
        )
        .unwrap()[0]["confidence"]
        .as_f64()
        .unwrap();

    assert!(
        (conf1 - conf2).abs() < 0.01,
        "second curate on same day must not compound decay: conf1={conf1:.3} conf2={conf2:.3}"
    );
}

#[test]
fn sustaining_failing_chunk_gets_archived() {
    // Issue 5 fix: chunks frequently used but rarely succeeding (and low confidence) must be
    // archived via 3f rather than surviving indefinitely via last_used_at refresh.
    let (kb, _file) = tmp_kb();
    let chunk_id = kb
        .add("always fails", "note", Some("t"), None, "manual", None)
        .unwrap();
    // Force used_count=10, used_success_count=1 (10% success), confidence=0.22 (< 0.25 threshold).
    kb.storage
        .conn_execute(
            "UPDATE chunks SET used_count=10, used_count_base=10,
         used_success_count=1, used_success_count_base=1,
         confidence=0.22, confidence_base=0.22, \
         last_used_at=datetime('now') WHERE id=?",
            rusqlite::params![chunk_id],
        )
        .unwrap();

    kb.evolve("manual").unwrap();

    let state = kb
        .storage
        .query_chunks_params(
            "SELECT state, state_reason FROM chunks WHERE id=?",
            rusqlite::params![chunk_id],
        )
        .unwrap();
    assert_eq!(state[0]["state"].as_str(), Some("archived"));
    assert_eq!(
        state[0]["state_reason"].as_str(),
        Some("sustained_task_failure")
    );
}

#[test]
fn pending_chunk_with_sustained_failure_gets_archived() {
    // P1-A fix: curate 3f now covers state='pending' in addition to state='active'.
    // A pending chunk recalled frequently but never producing successes must be archived.
    let (kb, _file) = tmp_kb();
    let chunk_id = kb
        .add(
            "pending always fails",
            "note",
            Some("t"),
            None,
            "manual",
            None,
        )
        .unwrap();
    // Move to pending state (simulate distill output) and inject bad stats.
    kb.storage
        .conn_execute(
            "UPDATE chunks SET state='pending', used_count=10, used_count_base=10,
         used_success_count=0, used_success_count_base=0,
         confidence=0.22, confidence_base=0.22, \
         last_used_at=datetime('now') WHERE id=?",
            rusqlite::params![chunk_id],
        )
        .unwrap();

    kb.evolve("manual").unwrap();

    let rows = kb
        .storage
        .query_chunks_params(
            "SELECT state, state_reason FROM chunks WHERE id=?",
            rusqlite::params![chunk_id],
        )
        .unwrap();
    assert_eq!(
        rows[0]["state"].as_str(),
        Some("archived"),
        "pending chunk with sustained failure must be archived by curate 3f"
    );
    assert_eq!(
        rows[0]["state_reason"].as_str(),
        Some("sustained_task_failure")
    );
}