infojenn 0.1.3

Compute information content of ontology terms from corpora of annotated items
Documentation 
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//! A module with some test data.

use crate::model::IndividualFeature;

pub(crate) fn fbn1_ectopia_lentis_subjects() -> Vec<Vec<IndividualFeature>> {
    [
        // FBN1 -> BM
        make_study_subject(&[
            ("HP:0001083", true),
            ("HP:0001065", true),
            ("HP:0012773", true),
            ("HP:0000501", false),
            ("HP:0000545", false),
            ("HP:0000486", false),
            ("HP:0002650", false),
            ("HP:0001382", false),
            ("HP:0000767", false),
            ("HP:0001166", false),
            ("HP:0000541", false),
            ("HP:0000768", false),
            ("HP:0000218", false),
            ("HP:0002616", false),
            ("HP:0001634", false),
        ]),
        // FBN1 -> JL
        make_study_subject(&[
            ("HP:0001083", true),
            ("HP:0000545", true),
            ("HP:0001382", true),
            ("HP:0000768", true),
            ("HP:0000218", true),
            ("HP:0001065", true),
            ("HP:0000501", false),
            ("HP:0000486", false),
            ("HP:0002650", false),
            ("HP:0000767", false),
            ("HP:0001166", false),
            ("HP:0000541", false),
            ("HP:0002616", false),
            ("HP:0001634", false),
            ("HP:0012773", false),
        ]),
        // FBN1 -> OP
        make_study_subject(&[
            ("HP:0001083", true),
            ("HP:0000545", true),
            ("HP:0001166", true),
            ("HP:0000218", true),
            ("HP:0001634", true),
            ("HP:0012773", true),
            ("HP:0000501", false),
            ("HP:0000486", false),
            ("HP:0002650", false),
            ("HP:0001382", false),
            ("HP:0000767", false),
            ("HP:0000541", false),
            ("HP:0000768", false),
            ("HP:0001065", false),
            ("HP:0002616", false),
        ]),
        // FBN1 -> RWT
        make_study_subject(&[
            ("HP:0001083", true),
            ("HP:0000545", true),
            ("HP:0000486", true),
            ("HP:0001382", true),
            ("HP:0001065", true),
            ("HP:0000501", false),
            ("HP:0002650", false),
            ("HP:0000767", false),
            ("HP:0001166", false),
            ("HP:0000541", false),
            ("HP:0000768", false),
            ("HP:0000218", false),
            ("HP:0002616", false),
            ("HP:0001634", false),
            ("HP:0012773", false),
        ]),
        // FBN1 -> VW
        make_study_subject(&[
            ("HP:0001083", true),
            ("HP:0000501", true),
            ("HP:0002650", true),
            ("HP:0000218", true),
            ("HP:0001065", true),
            ("HP:0000545", false),
            ("HP:0000486", false),
            ("HP:0001382", false),
            ("HP:0000767", false),
            ("HP:0001166", false),
            ("HP:0000541", false),
            ("HP:0000768", false),
            ("HP:0002616", false),
            ("HP:0001634", false),
            ("HP:0012773", false),
        ]),
    ]
    .into_iter()
    .collect()
}

fn make_study_subject(phenotypes: &[(&str, bool)]) -> Vec<IndividualFeature> {
    phenotypes
        .iter()
        .map(|&(curie, is_present)| IndividualFeature::new(curie.parse().unwrap(), is_present))
        .collect()
}