igv-rs 0.7.0

Interactive terminal genome viewer for FASTA / VCF / BAM / GFF / BED / bigWig / BEDPE. Includes a bundled-igv.js browser companion.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71

use igv_core::Region;

#[derive(Debug, Clone, Copy)]
pub enum SnapshotFormat {
    Svg,
    Png,
}

impl SnapshotFormat {
    pub fn from_path(p: &std::path::Path) -> Self {
        match p
            .extension()
            .and_then(|e| e.to_str())
            .map(|s| s.to_ascii_lowercase())
        {
            Some(ref s) if s == "png" => Self::Png,
            _ => Self::Svg,
        }
    }
}

#[derive(Debug, Clone)]
pub enum Action {
    /// Save the current view to disk. `path = None` → auto-named in cwd.
    SaveSnapshot {
        path: Option<std::path::PathBuf>,
        format: SnapshotFormat,
    },
    /// Move forward/backward. `large=false` shifts by 1/10 of the window
    /// (fine step, `h`/`l`); `large=true` shifts by a full window
    /// (page step, `a`/`d` and arrow keys).
    Move { forward: bool, large: bool },
    /// Zoom in / out.
    Zoom { zoom_in: bool },
    /// Jump to an explicit region.
    Goto(Region),
    /// Toggle dark/light theme.
    ToggleTheme,
    /// Open the command palette.
    OpenCommand,
    /// Submit the command palette buffer.
    CommandSubmit(String),
    /// Cancel command palette.
    CommandCancel,
    /// Set a bookmark to the current region under key `c`.
    SetBookmark(char),
    /// Jump to the bookmark stored at key `c`.
    JumpBookmark(char),
    /// Scroll the alignment lanes vertically. Positive = down, negative = up.
    ScrollAlignments(i16),
    /// Resize alignment-track minimum height. Positive = grow.
    ResizeAlignments(i16),
    /// Resize coverage-track height. Positive = grow.
    ResizeCoverage(i16),
    /// Toggle per-track / shared auto-scale across all signal tracks.
    ToggleSignalSharedScale,
    /// Resize signal-track height. Positive = grow.
    ResizeSignal(i16),
    /// Resize link-track height. Positive = grow.
    ResizeLink(i16),
    /// Toggle the keybinding help overlay.
    ToggleHelp,
    /// Close the keybinding help overlay (any-key dismiss).
    CloseHelp,
    /// Quit the application.
    Quit,
    /// Open a browser window showing the current view via igv-serve.
    OpenBrowser,
    /// No-op (used as a sentinel).
    None,
}