holodeck 0.2.0

Modern NGS read simulator
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
rust-version = "1.94.0"
name = "holodeck"
version = "0.2.0"
authors = ["Tim Fennell <tim@fulcrumgenomics.com>"]
build = "build.rs"
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Modern NGS read simulator"
homepage = "https://github.com/fulcrumgenomics/holodeck"
readme = "README.md"
license = "MIT"
repository = "https://github.com/fulcrumgenomics/holodeck"

[lib]
name = "holodeck_lib"
path = "src/lib.rs"

[[bin]]
name = "holodeck"
path = "src/main.rs"

[[test]]
name = "test_eval"
path = "tests/test_eval.rs"

[[test]]
name = "test_mutate"
path = "tests/test_mutate.rs"

[[test]]
name = "test_simulate"
path = "tests/test_simulate.rs"

[dependencies.anyhow]
version = "1"

[dependencies.bstr]
version = "1"

[dependencies.chrono]
version = "0.4"

[dependencies.clap]
version = "4"
features = [
    "derive",
    "wrap_help",
    "unicode",
]

[dependencies.coitrees]
version = "0.4"

[dependencies.enum_dispatch]
version = "0.3"

[dependencies.env_logger]
version = "0.11"

[dependencies.flate2]
version = "1"
features = ["zlib-ng"]
default-features = false

[dependencies.log]
version = "0"

[dependencies.mimalloc]
version = "0.1"
default-features = false

[dependencies.noodles]
version = "0.109"
features = [
    "bam",
    "fasta",
    "sam",
    "bgzf",
    "core",
    "vcf",
]

[dependencies.noodles-bgzf]
version = "0.46"
features = ["libdeflate"]

[dependencies.pooled-writer]
version = "0.4"

[dependencies.rand]
version = "0.9"

[dependencies.rand_distr]
version = "0.5"

[dependencies.thiserror]
version = "2"

[dev-dependencies.approx]
version = "0.5"

[dev-dependencies.tempfile]
version = "3"

[build-dependencies.built]
version = "0"
features = ["git2"]

[profile.release]
lto = "fat"
codegen-units = 1
panic = "abort"
overflow-checks = true