hme_toolbox 0.1.0

A nice toolbox for AI- using Hierarchical-Mixture of Experts
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23

/////
// src/parser.rs
use std::fs::File;
//use std::io::{BufReader, Read};

use bio::io::fasta::Reader;
use std::io::BufReader; // Remove `Read` if you're not using it

pub fn parse_fasta(file_path: &str) -> Result<Vec<String>, std::io::Error> {
    let file = File::open(file_path)?;
    let reader = BufReader::new(file);

    let records = Reader::new(reader)
        .records()
        .filter_map(Result::ok)
        .map(|rec| {
            // Convert Vec<u8> to String
            String::from_utf8(rec.seq().to_owned()).unwrap_or_else(|_| String::from("Invalid"))
        })
        .collect(); // Now collects Vec<String>

    Ok(records)
}