{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"id": "6ab2335c",
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd"
]
},
{
"cell_type": "code",
"execution_count": 38,
"id": "f7db5c05",
"metadata": {},
"outputs": [],
"source": [
"labels = pd.read_csv(\"tests/data/citeseer/nodes.tsv\", sep=\"\\t\")[[\"node_type\"]]\n",
"labels.to_csv(\"tests/data/citeseer/node_list.csv\", header=None, index=None)"
]
},
{
"cell_type": "code",
"execution_count": 47,
"id": "a5657bca",
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"node_type\r\n",
"Agents\r\n",
"IR\r\n",
"DB\r\n",
"AI\r\n",
"HCI\r\n",
"ML\r\n",
"Word\r\n",
"Unknown\r\n"
]
}
],
"source": [
"!head /bfd/graphs/linqs/CiteSeer/latest/preprocessed/undirected/733d2a25a673d8b777ecd366efd2cef45483474937ae74abfe53ef1cdd791b6d/node_types.tsv"
]
},
{
"cell_type": "code",
"execution_count": 41,
"id": "df8e68b7",
"metadata": {},
"outputs": [],
"source": [
"edges = pd.read_csv(\"tests/data/citeseer/edges.tsv\", sep=\"\\t\", header=None)[[0, 1]]\n",
"#labels.to_csv(\"tests/data/citeseer/edge_list.csv\", header=None, index=None)"
]
},
{
"cell_type": "code",
"execution_count": 53,
"id": "81f44615",
"metadata": {},
"outputs": [],
"source": [
"edges[((edges < 3312).all(axis=1)) & (edges[0] != edges[1])].to_csv(\"tests/data/citeseer/edge_list.csv\", header=None, index=None)"
]
},
{
"cell_type": "code",
"execution_count": 19,
"id": "fb766d80",
"metadata": {},
"outputs": [],
"source": [
"edges = pd.read_csv(\"tests/data/cora/edge_list.csv\", header=None)"
]
},
{
"cell_type": "code",
"execution_count": 1,
"id": "720ec18a",
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"3412"
]
},
"execution_count": 1,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"12 * 4**4 + 4**4+ 4**3 + 4**2 + 4"
]
},
{
"cell_type": "code",
"execution_count": 21,
"id": "f3623a4d",
"metadata": {},
"outputs": [
{
"ename": "IndexError",
"evalue": "index 4140 is out of bounds for axis 0 with size 4140",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m Traceback (most recent call last)",
"\u001b[0;32m/tmp/ipykernel_2466193/876094773.py\u001b[0m in \u001b[0;36m<cell line: 1>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0medges\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mlabels\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalues\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0medges\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;36m7\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m: index 4140 is out of bounds for axis 0 with size 4140"
]
}
],
"source": [
"edges[labels.values[edges[0]] == 7]"
]
},
{
"cell_type": "code",
"execution_count": 32,
"id": "780c2e3e",
"metadata": {},
"outputs": [],
"source": [
"edges[(edges < 2708).all(axis=1)].to_csv(\"tests/data/cora/edge_list.csv\", index=False)"
]
},
{
"cell_type": "code",
"execution_count": 23,
"id": "83f569aa",
"metadata": {},
"outputs": [
{
"ename": "IndexError",
"evalue": "index 4140 is out of bounds for axis 0 with size 4140",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m Traceback (most recent call last)",
"\u001b[0;32m/tmp/ipykernel_2466193/471396866.py\u001b[0m in \u001b[0;36m<cell line: 1>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mlabels\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalues\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0medges\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;36m7\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m: index 4140 is out of bounds for axis 0 with size 4140"
]
}
],
"source": [
"labels.values[edges[0]] == 7"
]
},
{
"cell_type": "code",
"execution_count": 24,
"id": "26edc03f",
"metadata": {},
"outputs": [
{
"data": {
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},
"execution_count": 24,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"edges"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "a942bcbc",
"metadata": {},
"outputs": [],
"source": []
}
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