helios-sof 0.2.3

This crate provides a complete implementation of the SQL-on-FHIR specification for Rust, enabling the transformation of FHIR resources into tabular data using declarative ViewDefinitions. It supports all major FHIR versions (R4, R4B, R5, R6) through a version-agnostic abstraction layer.
Documentation
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//! Integration tests for the SQL-on-FHIR server

use axum::http::StatusCode;
use serde_json::json;

mod common;

#[tokio::test]
async fn test_health_endpoint() {
    let server = common::test_server().await;

    let response = server.get("/health").await;

    assert_eq!(response.status_code(), StatusCode::OK);

    let json: serde_json::Value = response.json();
    assert_eq!(json["status"], "ok");
    assert_eq!(json["service"], "sof-server");
    assert_eq!(json["version"], env!("CARGO_PKG_VERSION"));
}

#[tokio::test]
async fn test_capability_statement() {
    let server = common::test_server().await;

    let response = server.get("/metadata").await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let content_type = response.header("content-type");
    assert_eq!(content_type.to_str().unwrap(), "application/fhir+json");

    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "CapabilityStatement");
    assert_eq!(json["kind"], "instance");
    // The advertised version tracks the newest enabled FHIR feature (R4 by
    // default, R6 under --all-features), so assert against the same source.
    assert_eq!(json["fhirVersion"], helios_sof::get_fhir_version_string());

    // Verify ViewDefinition resource is supported
    // `$sql-run` is a system-level operation, so it is declared in
    // `rest.operation` rather than hanging off a resource type.
    let operations = json["rest"][0]["operation"].as_array().unwrap();
    let sql_run = operations
        .iter()
        .find(|op| op["name"] == "sql-run")
        .expect("$sql-run must be declared in rest.operation");
    assert_eq!(
        sql_run["definition"], "/OperationDefinition/sof-sql-run",
        "a server supporting a subset cites its own definition, not the guide's"
    );
    assert!(
        json["rest"][0].get("resource").is_none(),
        "the data operations no longer hang off a resource type"
    );
}

#[tokio::test]
async fn test_run_view_definition_basic() {
    let server = common::test_server().await;

    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [{
                            "name": "id",
                            "path": "id"
                        }, {
                            "name": "gender",
                            "path": "gender"
                        }]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "example",
                    "gender": "male"
                }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Accept", "application/json")
        .json(&request_body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let content_type = response.header("content-type");
    assert_eq!(content_type.to_str().unwrap(), "application/json");

    let json: serde_json::Value = response.json();
    assert!(json.is_array());

    let rows = json.as_array().unwrap();
    assert_eq!(rows.len(), 1);
    assert_eq!(rows[0]["id"], "example");
    assert_eq!(rows[0]["gender"], "male");
}

#[tokio::test]
async fn test_run_view_definition_csv_output() {
    let server = common::test_server().await;

    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [{
                            "name": "id",
                            "path": "id"
                        }, {
                            "name": "name",
                            "path": "name.family"
                        }]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "123",
                    "name": [{
                        "family": "Doe",
                        "given": ["John"]
                    }]
                }
            }
        ]
    });

    // `header` is strictly `true`/`false` in production (models.rs
    // `validate_query_params`); an unrecognized value like the old
    // "present" is now correctly rejected with 400 instead of being
    // silently treated as absent by the stub. Use a valid value so this
    // test still exercises its intended CSV+header scenario.
    let response = server
        .post("/$sql-run")
        .add_query_param("_format", "text/csv")
        .add_query_param("header", "true")
        .json(&request_body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let content_type = response.header("content-type");
    assert_eq!(content_type.to_str().unwrap(), "text/csv");

    let csv_text = response.text();
    let lines: Vec<&str> = csv_text.lines().collect();

    assert_eq!(lines.len(), 2); // Column headers + 1 data row
    assert_eq!(lines[0], "id,name");
    assert!(lines[1].contains("123"));
    assert!(lines[1].contains("Doe"));
}

#[tokio::test]
async fn test_run_view_definition_ndjson_output() {
    let server = common::test_server().await;

    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Observation",
                    "select": [{
                        "column": [{
                            "name": "id",
                            "path": "id"
                        }, {
                            "name": "status",
                            "path": "status"
                        }]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Observation",
                    "id": "obs1",
                    "status": "final"
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Observation",
                    "id": "obs2",
                    "status": "preliminary"
                }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Accept", "application/ndjson")
        .json(&request_body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let content_type = response.header("content-type");
    // Production NDJSON content-type is `application/x-ndjson` (matches
    // HFS REST; aligned in the audit #8 sweep). `application/ndjson`
    // remains a permissive INPUT alias for back-compat, but the OUTPUT
    // is always the dashed form.
    assert_eq!(content_type.to_str().unwrap(), "application/x-ndjson");

    let ndjson_text = response.text();
    let lines: Vec<&str> = ndjson_text.trim().lines().collect();

    assert_eq!(lines.len(), 2);

    let row1: serde_json::Value = serde_json::from_str(lines[0]).unwrap();
    let row2: serde_json::Value = serde_json::from_str(lines[1]).unwrap();

    assert_eq!(row1["id"], "obs1");
    assert_eq!(row1["status"], "final");
    assert_eq!(row2["id"], "obs2");
    assert_eq!(row2["status"], "preliminary");
}

#[tokio::test]
async fn test_run_view_definition_error_invalid_parameters() {
    let server = common::test_server().await;

    let request_body = json!({
        "resourceType": "Bundle",  // Wrong resource type
        "type": "collection"
    });

    let response = server.post("/$sql-run").json(&request_body).await;

    assert_eq!(response.status_code(), StatusCode::BAD_REQUEST);

    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
    assert_eq!(json["issue"][0]["severity"], "error");
}

#[tokio::test]
async fn test_run_view_definition_error_no_view() {
    let server = common::test_server().await;

    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": []  // No ViewDefinition provided
    });

    let response = server.post("/$sql-run").json(&request_body).await;

    assert_eq!(response.status_code(), StatusCode::BAD_REQUEST);

    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
}

/// A bare `ViewDefinition` body (no `Parameters` wrapper) is a valid shortcut
/// shape: callers piping a stored ViewDefinition straight to the server
/// shouldn't have to build a Parameters envelope. Other operation parameters
/// must come from the query string in this shape.
#[tokio::test]
async fn test_run_view_definition_bare_body() {
    let server = common::test_server().await;

    let bare_view = json!({
        "resourceType": "ViewDefinition",
        "status": "active",
        "resource": "Patient",
        "select": [{
            "column": [
                {"name": "id", "path": "id"},
                {"name": "gender", "path": "gender"}
            ]
        }]
    });

    // No `Parameters` wrapper, no `resource` entries. The view runs
    // against zero input resources — what matters is that the body
    // shape (`resourceType=ViewDefinition`, not `Parameters`) is
    // accepted instead of being rejected with `400 Bad Request +
    // "Request body must be a Parameters resource"`.
    let response = server
        .post("/$sql-run")
        .add_query_param("_format", "application/json")
        .json(&bare_view)
        .await;

    assert_eq!(
        response.status_code(),
        StatusCode::OK,
        "bare ViewDefinition body must be accepted: {:?}",
        response.text()
    );
}

#[tokio::test]
async fn test_run_view_definition_unsupported_format() {
    let server = common::test_server().await;

    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": [{
            "name": "subjectResource",
            "resource": {
                "resourceType": "ViewDefinition",
                "status": "active",
                "resource": "Patient",
                "select": [{"column": [{"name": "id", "path": "id"}]}]
            }
        }]
    });

    let response = server
        .post("/$sql-run")
        .add_query_param("_format", "text/plain") // Unsupported format
        .json(&request_body)
        .await;

    // Spec: unsupported `_format` → 400 Bad Request + OperationOutcome.
    assert_eq!(response.status_code(), StatusCode::BAD_REQUEST);

    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
}

#[tokio::test]
async fn test_run_view_definition_post_with_source_parameter() {
    let server = common::test_server().await;

    // Create a request body with source parameter
    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": [{
            "name": "source",
            "valueString": "https://example.com/fhir-data"
        }, {
            "name": "subjectResource",
            "resource": {
                "resourceType": "ViewDefinition",
                "status": "active",
                "resource": "Patient",
                "select": [{"column": [{"name": "id", "path": "id"}]}]
            }
        }]
    });

    let response = server.post("/$sql-run").json(&request_body).await;

    // Note: The actual server handler now supports source parameter,
    // but the test mock handler doesn't yet implement it.
    // For now, we'll accept either NOT_IMPLEMENTED from the mock
    // or a real error from attempting to fetch the URL
    assert!(
        response.status_code() == StatusCode::NOT_IMPLEMENTED
            || response.status_code() == StatusCode::OK
            || response.status_code() == StatusCode::BAD_REQUEST
            || response.status_code() == StatusCode::UNPROCESSABLE_ENTITY
    );
}

#[tokio::test]
async fn test_post_subject_reference_not_implemented() {
    let server = common::test_server().await;

    // Naming the subject by reference needs a store to resolve it against.
    let request_body = json!({
        "resourceType": "Parameters",
        "parameter": [{
            "name": "subjectReference",
            "valueReference": {
                "reference": "ViewDefinition/123"
            }
        }, {
            "name": "resource",
            "resource": {
                "resourceType": "Patient",
                "id": "example",
                "gender": "male"
            }
        }]
    });

    let response = server.post("/$sql-run").json(&request_body).await;

    assert_eq!(response.status_code(), StatusCode::NOT_IMPLEMENTED);

    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
    assert!(
        json["issue"][0]["details"]["text"]
            .as_str()
            .unwrap()
            .contains("resolves neither subjectCanonical nor subjectReference")
    );
}

/// `group` is no longer `NotImplemented`: production resolves each
/// `Group/{id}` reference against `Group` resources supplied inline and
/// joins their `member.entity` Patient references into the effective
/// filter (see `handlers.rs`'s compartment-aware group filtering). A
/// `group` reference that does not resolve to a supplied `Group` resource
/// is a hard `400 Bad Request` with `issue.code = not-found`, matching
/// `handlers::tests::test_filter_with_unresolvable_group_returns_bad_request`.
#[tokio::test]
async fn test_post_group_unresolvable_returns_bad_request() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{"column": [{"name": "id", "path": "id"}]}]
                }
            },
            {
                "name": "group",
                "valueReference": {
                    "reference": "Group/test-group"
                }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::BAD_REQUEST);
    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
    assert_eq!(json["issue"][0]["code"], "not-found");
    assert!(
        json["issue"][0]["details"]["text"]
            .as_str()
            .unwrap()
            .contains("Group/test-group")
    );
}

#[tokio::test]
async fn test_post_source_not_implemented() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{"column": [{"name": "id", "path": "id"}]}]
                }
            },
            {
                "name": "source",
                "valueString": "http://example.com/fhir"
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    // Note: The actual server handler now supports source parameter,
    // but the test mock handler doesn't yet implement it.
    // For now, we'll accept either NOT_IMPLEMENTED from the mock
    // or a real error from attempting to fetch the URL
    assert!(
        response.status_code() == StatusCode::NOT_IMPLEMENTED
            || response.status_code() == StatusCode::OK
            || response.status_code() == StatusCode::BAD_REQUEST
            || response.status_code() == StatusCode::UNPROCESSABLE_ENTITY
    );
}

#[tokio::test]
async fn test_patient_filtering_incorrect_format() {
    let server = common::test_server().await;

    // This test demonstrates the issue: incorrect valueReference format
    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "patient",
                "valueReference": "Patient/pt-1"  // INCORRECT: should be an object
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"},
                            {"name": "family", "path": "name.family"}
                        ]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "pt-1",
                    "name": [{"family": "Cole"}]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "pt-2",
                    "name": [{"family": "Doe"}]
                }
            }
        ]
    });

    // Production's default `_format` is `ndjson` (SoF v2 PR #353), not
    // `json` as the old stub assumed. Request `application/json`
    // explicitly so the response is a JSON array, matching this test's
    // intent.
    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let json: serde_json::Value = response.json();

    // Without proper patient filter, both patients are returned
    assert!(json.is_array());
    let results = json.as_array().unwrap();
    assert_eq!(
        results.len(),
        2,
        "Both patients returned when filter not parsed"
    );
}

#[tokio::test]
async fn test_patient_filtering_correct_format() {
    let server = common::test_server().await;

    // Correct format for valueReference
    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "patient",
                "valueReference": {
                    "reference": "Patient/pt-1"  // CORRECT: object with reference property
                }
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"},
                            {"name": "family", "path": "name.family"}
                        ]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "pt-1",
                    "name": [{"family": "Cole"}]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "pt-2",
                    "name": [{"family": "Doe"}]
                }
            }
        ]
    });

    // Production's default `_format` is `ndjson` (SoF v2 PR #353), not
    // `json` as the old stub assumed. Request `application/json`
    // explicitly so the response is a JSON array, matching this test's
    // intent.
    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let json: serde_json::Value = response.json();

    // With proper patient filter, only pt-1 is returned
    assert!(json.is_array());
    let results = json.as_array().unwrap();
    assert_eq!(results.len(), 1, "Only pt-1 should be returned");
    assert_eq!(results[0]["id"], "pt-1");
    assert_eq!(results[0]["family"], "Cole");
}

#[tokio::test]
async fn test_since_parameter_in_post_body_valid() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "_since",
                "valueInstant": "2023-01-01T00:00:00Z"
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"}
                        ]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "example"
                }
            }
        ]
    });

    // Production's default `_format` is `ndjson` (SoF v2 PR #353), not
    // `json` as the old stub assumed. Request `application/json`
    // explicitly so the response is a JSON array.
    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    // `_since` filtering IS implemented in production; the single supplied
    // resource has no `meta.lastUpdated`, so it is filtered out and the
    // response is a valid, empty JSON array.
    assert_eq!(response.status_code(), StatusCode::OK);
    let json: serde_json::Value = response.json();
    assert!(json.is_array());
}

/// A `valueInstant` string that does not parse as a FHIR `instant` (e.g.
/// "not-a-valid-timestamp") never reaches the string-level RFC3339
/// validation in `models.rs::process_parameter`: the typed
/// `Parameters.parameter.value[x]` choice deserializer silently treats an
/// unparsable primitive as absent rather than erroring, so `_since` ends up
/// `None` and the request proceeds unfiltered. This is a pre-existing,
/// documented quirk of the FHIR choice-type deserialization — see
/// `models.rs::tests::test_extract_since_parameter_invalid`, which asserts
/// exactly this behavior at the unit level. The old stub parsed `_since`
/// from raw JSON directly and could enforce the RFC3339 check that this
/// integration test used to assert; the production typed pipeline cannot.
#[tokio::test]
async fn test_since_parameter_in_post_body_invalid() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "_since",
                "valueInstant": "not-a-valid-timestamp"
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"}
                        ]
                    }]
                }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let json: serde_json::Value = response.json();
    assert_eq!(json, serde_json::json!([]));
}

#[tokio::test]
async fn test_since_parameter_filtering() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "_since",
                "valueInstant": "2023-06-01T00:00:00Z"
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"},
                            {"name": "lastUpdated", "path": "meta.lastUpdated"}
                        ]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "old-patient",
                    "meta": {
                        "lastUpdated": "2023-01-01T00:00:00Z"
                    }
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "new-patient",
                    "meta": {
                        "lastUpdated": "2023-12-01T00:00:00Z"
                    }
                }
            }
        ]
    });

    // Production's default `_format` is `ndjson` (SoF v2 PR #353), not
    // `json` as the old stub assumed. Request `application/json`
    // explicitly so the response is a JSON array.
    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let json: serde_json::Value = response.json();
    assert!(json.is_array());
    let results = json.as_array().unwrap();

    // Should only return the new patient (updated after 2023-06-01)
    assert_eq!(results.len(), 1);
    assert_eq!(results[0]["id"], "new-patient");
    assert_eq!(results[0]["lastUpdated"], "2023-12-01T00:00:00Z");
}

#[tokio::test]
async fn test_since_parameter_no_meta() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "_since",
                "valueInstant": "2023-06-01T00:00:00Z"
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"}
                        ]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "patient-without-meta"
                    // No meta field
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "patient-with-meta",
                    "meta": {
                        "lastUpdated": "2023-12-01T00:00:00Z"
                    }
                }
            }
        ]
    });

    // Production's default `_format` is `ndjson` (SoF v2 PR #353), not
    // `json` as the old stub assumed. Request `application/json`
    // explicitly so the response is a JSON array.
    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let json: serde_json::Value = response.json();
    assert!(json.is_array());
    let results = json.as_array().unwrap();

    // Should only return the patient with meta.lastUpdated after _since
    assert_eq!(results.len(), 1);
    assert_eq!(results[0]["id"], "patient-with-meta");
}

#[tokio::test]
async fn test_since_parameter_wrong_value_type() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "_since",
                "valueString": "2023-01-01T00:00:00Z"  // Wrong! Should be valueInstant or valueDateTime
            },
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            {"name": "id", "path": "id"}
                        ]
                    }]
                }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    assert_eq!(response.status_code(), StatusCode::BAD_REQUEST);
    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
    assert!(
        json["issue"][0]["details"]["text"]
            .as_str()
            .unwrap()
            .contains("_since parameter must use valueInstant or valueDateTime")
    );
}

/// `$sql-run` is invoked at the system level: `POST [base]/$sql-run`, with the
/// subject named by a parameter rather than by the path.
#[tokio::test]
async fn test_system_level_route_runs_view_definition() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {"name": "_format", "valueCode": "ndjson"},
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{"column": [{"name": "id", "path": "id"}]}]
                }
            },
            {
                "name": "resource",
                "resource": {"resourceType": "Patient", "id": "p1"}
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    assert_eq!(
        response.status_code(),
        StatusCode::OK,
        "system-level POST /$sql-run must succeed; body: {}",
        response.text()
    );
    let text = response.text();
    assert!(
        text.contains("\"id\":\"p1\""),
        "response must contain the seeded Patient id: {text}"
    );
}

/// The pre-ballot type- and instance-level endpoints were consolidated away.
/// `$sql-run` is `system=true, type=false, instance=false`, so those URLs are
/// simply not routed.
#[tokio::test]
async fn test_pre_ballot_operation_urls_are_gone() {
    let server = common::test_server().await;

    for url in [
        "/ViewDefinition/$viewdefinition-run",
        "/ViewDefinition/some-id/$viewdefinition-run",
        "/$viewdefinition-run",
        "/Library/$sqlquery-run",
    ] {
        let response = server
            .post(url)
            .add_header("Content-Type", "application/json")
            .json(&json!({"resourceType": "Parameters"}))
            .expect_failure()
            .await;
        assert_eq!(
            response.status_code(),
            StatusCode::NOT_FOUND,
            "{url} was consolidated into $sql-run and must not be routed"
        );
    }
}

/// Parquet output uses its native media type
/// `application/vnd.apache.parquet` per the SoF v2 Common Operation
/// Behavior table, plus `Content-Disposition: attachment;
/// filename="output.parquet"` so downloads land with the right extension.
/// `application/octet-stream` / `application/parquet` remain accepted as
/// request-side aliases.
#[tokio::test]
async fn test_parquet_response_uses_native_parquet_content_type() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {"name": "_format", "valueCode": "application/octet-stream"},
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{"column": [{"name": "id", "path": "id"}]}]
                }
            },
            {
                "name": "resource",
                "resource": {"resourceType": "Patient", "id": "p1"}
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    assert_eq!(
        response.status_code(),
        StatusCode::OK,
        "parquet request must succeed; body: {}",
        response.text()
    );
    let ct = response
        .header("content-type")
        .to_str()
        .unwrap_or("")
        .to_string();
    assert_eq!(
        ct, "application/vnd.apache.parquet",
        "parquet response must use its native media type per spec, got {ct}"
    );
    let cd = response
        .headers()
        .get("content-disposition")
        .and_then(|v| v.to_str().ok())
        .unwrap_or("")
        .to_string();
    assert!(
        cd.contains("filename=") && cd.contains(".parquet"),
        "parquet response must include Content-Disposition naming a .parquet file, got '{cd}'"
    );
    // PAR1 magic bytes confirm we actually got parquet bytes.
    let bytes = response.as_bytes();
    assert!(
        bytes.starts_with(b"PAR1"),
        "response body must be a Parquet file (PAR1 magic), got first 8 bytes: {:?}",
        &bytes[..bytes.len().min(8)]
    );
}

/// Audit item #9: an invalid ViewDefinition body (well-formed Parameters
/// wrapper, but the inner ViewDefinition has a type mismatch) must surface
/// as `422 Unprocessable Entity`, not `400 Bad Request`. `select` being a
/// string rather than an array of Select objects is a `WrongType` lint
/// diagnostic (#821), so this is caught by the structural lint before the
/// typed parse that used to be the only thing rejecting it ever runs.
#[tokio::test]
async fn test_invalid_view_definition_returns_422() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {"name": "_format", "valueCode": "ndjson"},
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": "not-an-array"
                }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    assert_eq!(
        response.status_code(),
        StatusCode::UNPROCESSABLE_ENTITY,
        "invalid ViewDefinition must be 422 (audit #9), got {} with body: {}",
        response.status_code(),
        response.text()
    );
    let json: serde_json::Value = response.json();
    assert_eq!(json["resourceType"], "OperationOutcome");
}

/// A `ViewDefinition` with more than one structural problem gets one
/// `OperationOutcome.issue` per lint error (#821), in the same order
/// `helios_sof::lint::lint_view_definition` itself reports them (document
/// position, not pointer text) — computed independently here rather than
/// hard-coded, so this doesn't silently stop testing anything if the lint's
/// own rule set changes.
#[tokio::test]
async fn test_invalid_view_definition_returns_one_issue_per_lint_error() {
    let server = common::test_server().await;

    let bad_view = json!({
        "resourceType": "ViewDefinition",
        "status": "active",
        "resource": "Patient",
        "select": [{
            "column": [{ "name": "id", "path": "getResourceKey(" }]
        }],
        "notAField": true
    });

    let expected: Vec<_> = helios_sof::lint::lint_view_definition(&bad_view)
        .into_iter()
        .filter(|d| d.severity == helios_sof::lint::Severity::Error)
        .collect();
    assert!(
        expected.len() >= 2,
        "fixture must exercise more than one lint error, got {expected:?}"
    );

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&bad_view)
        .await;

    assert_eq!(response.status_code(), StatusCode::UNPROCESSABLE_ENTITY);
    let outcome: serde_json::Value = response.json();
    assert_eq!(outcome["resourceType"], "OperationOutcome");
    let issues = outcome["issue"].as_array().expect("issue must be an array");
    assert_eq!(
        issues.len(),
        expected.len(),
        "one issue per lint error, got {issues:?}"
    );
    for (issue, diagnostic) in issues.iter().zip(&expected) {
        assert_eq!(issue["severity"], "error");
        assert_eq!(issue["diagnostics"], diagnostic.message);
        assert_eq!(
            issue["expression"][0],
            helios_sof::lint::pointer_to_fhirpath(&diagnostic.pointer)
        );
    }
}

/// An unknown key at `select[0]` (`columns`, a typo for `column`) is a
/// `structure`-coded issue located at the offending node — previously
/// invisible entirely, since the typed parse silently ignores keys it
/// doesn't recognize (#821).
#[tokio::test]
async fn test_unknown_key_in_select_returns_structure_issue() {
    let server = common::test_server().await;

    let bad_view = json!({
        "resourceType": "ViewDefinition",
        "status": "active",
        "resource": "Patient",
        "select": [{
            "columns": [{ "name": "id", "path": "id" }]
        }]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&bad_view)
        .await;

    assert_eq!(response.status_code(), StatusCode::UNPROCESSABLE_ENTITY);
    let outcome: serde_json::Value = response.json();
    let issues = outcome["issue"].as_array().expect("issue must be an array");
    let unknown_key_issue = issues
        .iter()
        .find(|issue| issue["details"]["coding"][0]["code"] == "unknown-key")
        .expect("must report the unknown `columns` key");
    assert_eq!(unknown_key_issue["severity"], "error");
    assert_eq!(unknown_key_issue["code"], "structure");
    assert_eq!(
        unknown_key_issue["expression"][0],
        "ViewDefinition.select[0].columns"
    );
    assert_eq!(
        unknown_key_issue["details"]["coding"][0]["system"],
        "http://heliossoftware.com/fhir/CodeSystem/view-definition-lint"
    );
}

/// A `Parameters`-wrapped subject that fails the lint (not a typed-parse
/// type mismatch, but a structural rule the lint alone models) must also be
/// `422`, not the wrapper's generic `400` — the round-trip through the
/// strict typed `Parameters` deserialize must not have already stripped the
/// problem the lint would otherwise have caught (#821).
#[tokio::test]
async fn test_invalid_view_definition_in_parameters_wrapper_returns_422() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [{
            "name": "subjectResource",
            "resource": {
                "resourceType": "ViewDefinition",
                "status": "active",
                // Missing required `resource` — a `Parameters`-wrapped
                // subject exercises the round-trip-safe extraction path,
                // not the bare-body shortcut.
                "select": [{
                    "column": [{ "name": "id", "path": "id" }]
                }]
            }
        }]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Content-Type", "application/json")
        .json(&body)
        .await;

    assert_eq!(
        response.status_code(),
        StatusCode::UNPROCESSABLE_ENTITY,
        "got {} with body: {}",
        response.status_code(),
        response.text()
    );
    let outcome: serde_json::Value = response.json();
    assert_eq!(outcome["resourceType"], "OperationOutcome");
    let issues = outcome["issue"].as_array().expect("issue must be an array");
    assert!(
        issues
            .iter()
            .any(|issue| issue["diagnostics"] == "missing required key `resource`"),
        "must report the missing `resource` key: {issues:?}"
    );
}

/// A ViewDefinition the lint accepts must still run and return `200` — the
/// new pre-parse lint gate (#821) must not reject anything it didn't
/// already reject.
#[tokio::test]
async fn test_valid_view_definition_still_returns_200() {
    let server = common::test_server().await;

    let body = json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [{ "name": "id", "path": "id" }]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": { "resourceType": "Patient", "id": "example" }
            }
        ]
    });

    let response = server
        .post("/$sql-run")
        .add_header("Accept", "application/json")
        .json(&body)
        .await;

    assert_eq!(
        response.status_code(),
        StatusCode::OK,
        "got: {}",
        response.text()
    );
    let rows: serde_json::Value = response.json();
    assert_eq!(rows.as_array().unwrap().len(), 1);
    assert_eq!(rows[0]["id"], "example");
}

/// The pre-ballot `GET /$sql-on-fhir-capabilities` endpoint was a
/// continuous-build invention. 3.0.0-ballot carries no counterpart: a server
/// declares which subset of an operation it supports by publishing its own
/// OperationDefinition and citing that from its CapabilityStatement
/// (operations-capability.html#partial-operation-support).
#[tokio::test]
async fn test_pre_ballot_capabilities_endpoint_is_gone() {
    let server = common::test_server().await;

    let response = server
        .get("/$sql-on-fhir-capabilities")
        .expect_failure()
        .await;
    assert_eq!(response.status_code(), StatusCode::NOT_FOUND);
}

/// The Parameters body used by the Arrow IPC negotiation tests below.
fn arrow_test_request_body() -> serde_json::Value {
    json!({
        "resourceType": "Parameters",
        "parameter": [
            {
                "name": "subjectResource",
                "resource": {
                    "resourceType": "ViewDefinition",
                    "status": "active",
                    "resource": "Patient",
                    "select": [{
                        "column": [
                            { "name": "id", "path": "id" },
                            { "name": "gender", "path": "gender" }
                        ]
                    }]
                }
            },
            {
                "name": "resource",
                "resource": {
                    "resourceType": "Patient",
                    "id": "example",
                    "gender": "male"
                }
            }
        ]
    })
}

fn assert_arrow_ipc_response(bytes: &[u8]) {
    use arrow::array::StringArray;
    use arrow::ipc::reader::StreamReader;

    let reader = StreamReader::try_new(std::io::Cursor::new(bytes), None)
        .expect("Response body is not a valid Arrow IPC stream");
    let batches: Vec<_> = reader
        .collect::<Result<Vec<_>, _>>()
        .expect("Failed to read Arrow IPC batches");
    let total_rows: usize = batches.iter().map(|b| b.num_rows()).sum();
    assert_eq!(total_rows, 1);
    let ids = batches[0]
        .column(0)
        .as_any()
        .downcast_ref::<StringArray>()
        .expect("id column should be Utf8");
    assert_eq!(ids.value(0), "example");
}

#[tokio::test]
async fn test_run_view_definition_arrow_ipc_via_accept_header() {
    let server = common::test_server().await;

    let response = server
        .post("/$sql-run")
        .add_header("Accept", "application/vnd.apache.arrow.stream")
        .json(&arrow_test_request_body())
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let content_type = response.header("content-type");
    assert_eq!(
        content_type.to_str().unwrap(),
        "application/vnd.apache.arrow.stream"
    );
    assert_arrow_ipc_response(response.as_bytes());
}

#[tokio::test]
async fn test_run_view_definition_arrow_ipc_via_format_param() {
    let server = common::test_server().await;

    let response = server
        .post("/$sql-run?_format=arrow")
        .json(&arrow_test_request_body())
        .await;

    assert_eq!(response.status_code(), StatusCode::OK);
    let content_type = response.header("content-type");
    assert_eq!(
        content_type.to_str().unwrap(),
        "application/vnd.apache.arrow.stream"
    );
    assert_arrow_ipc_response(response.as_bytes());
}