[package]
edition = "2024"
name = "helicase"
version = "0.1.1"
authors = [
"Igor Martayan",
"Charles Paperman",
]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "SIMD-accelerated library for FASTA/FASTQ parsing and bitpacking"
documentation = "https://docs.rs/helicase"
readme = "README.md"
keywords = [
"bioinformatics",
"fasta",
"fastq",
"bitpacking",
"simd",
]
categories = ["science::bioinformatics"]
license = "MIT"
repository = "https://github.com/imartayan/helicase"
[package.metadata.docs.rs]
all-features = true
[features]
bz2 = ["deko/bzip2"]
default = [
"gz",
"zstd",
]
gz = [
"deko/flate2",
"flate2",
]
no-pdep = []
xz = ["deko/xz"]
zstd = ["deko/zstd"]
[lib]
name = "helicase"
path = "src/lib.rs"
[[example]]
name = "fq_to_fa"
path = "examples/fq_to_fa.rs"
[[example]]
name = "histogram"
path = "examples/histogram.rs"
[[example]]
name = "minimal"
path = "examples/minimal.rs"
[[example]]
name = "packed"
path = "examples/packed.rs"
required-features = ["packed-seq"]
[dependencies.deko]
version = "0.6"
default-features = false
[dependencies.flate2]
version = "1.1"
features = ["zlib-rs"]
optional = true
[dependencies.memchr]
version = "2.8"
[dependencies.memmap2]
version = "0.9"
[dependencies.packed-seq]
version = "4.4"
optional = true
default-features = false
[dependencies.paraseq]
version = "0.4"
optional = true
default-features = false