hdf5-src 0.8.1

Build script for compiling HDF5 C library from source.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224

#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5.  The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
## Makefile.am
## Run automake to generate a Makefile.in from this file.
#
# HDF5 Library Makefile(.in)
#

include $(top_srcdir)/config/commence.am
include $(top_srcdir)/config/lt_vers.am


# How to build H5detect for number format detection.
# Use -g to force no optimization since many compilers (e.g., Intel) takes
# a long time to compile it with any optimization on.  H5detect is used
# to generate H5Tinit.c once. So, optimization is not critical.
noinst_PROGRAMS = H5detect H5make_libsettings

# Our main target, the HDF5 library
lib_LTLIBRARIES=libhdf5.la

# Add libtool numbers to the HDF5 library (from config/lt_vers.am)
libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)

# H5Tinit.c and H5lib_settings.c are generated files and should be cleaned.
MOSTLYCLEANFILES=H5Tinit.c H5lib_settings.c
# H5pubconf.h is generated by configure, and should be cleaned.
DISTCLEANFILES=H5pubconf.h $(H5CC_NAME)

# library sources
libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \
        H5A.c H5Abtree2.c H5Adense.c H5Adeprec.c H5Aint.c H5Atest.c \
        H5AC.c H5ACdbg.c H5ACproxy_entry.c \
        H5B.c H5Bcache.c H5Bdbg.c \
        H5B2.c H5B2cache.c H5B2dbg.c H5B2hdr.c H5B2int.c H5B2internal.c \
        H5B2leaf.c H5B2stat.c H5B2test.c \
        H5C.c H5Cdbg.c H5Cepoch.c H5Cimage.c H5Clog.c H5Clog_json.c H5Clog_trace.c \
        H5Cprefetched.c H5Cquery.c H5Ctag.c H5Ctest.c \
        H5CS.c \
        H5CX.c \
        H5D.c H5Dbtree.c H5Dbtree2.c H5Dchunk.c H5Dcompact.c H5Dcontig.c H5Ddbg.c \
        H5Ddeprec.c H5Dearray.c H5Defl.c H5Dfarray.c H5Dfill.c H5Dint.c \
        H5Dio.c H5Dlayout.c H5Dnone.c \
        H5Doh.c H5Dscatgath.c H5Dselect.c \
        H5Dsingle.c H5Dtest.c H5Dvirtual.c \
        H5E.c H5Edeprec.c H5Eint.c \
        H5EA.c H5EAcache.c H5EAdbg.c H5EAdblkpage.c H5EAdblock.c H5EAhdr.c \
        H5EAiblock.c H5EAint.c H5EAsblock.c H5EAstat.c H5EAtest.c \
        H5F.c H5Faccum.c H5Fcwfs.c \
        H5Fdbg.c H5Fdeprec.c H5Fefc.c H5Ffake.c H5Fint.c H5Fio.c \
        H5Fmount.c H5Fquery.c \
        H5Fsfile.c H5Fspace.c H5Fsuper.c H5Fsuper_cache.c H5Ftest.c \
        H5FA.c H5FAcache.c H5FAdbg.c H5FAdblock.c H5FAdblkpage.c H5FAhdr.c \
        H5FAint.c H5FAstat.c H5FAtest.c \
        H5FD.c H5FDcore.c H5FDfamily.c H5FDhdfs.c H5FDint.c H5FDlog.c \
        H5FDmulti.c H5FDsec2.c H5FDspace.c \
        H5FDsplitter.c H5FDstdio.c H5FDtest.c \
        H5FL.c H5FO.c H5FS.c H5FScache.c H5FSdbg.c H5FSint.c H5FSsection.c \
        H5FSstat.c H5FStest.c \
        H5G.c H5Gbtree2.c H5Gcache.c \
        H5Gcompact.c H5Gdense.c H5Gdeprec.c H5Gent.c \
        H5Gint.c H5Glink.c \
        H5Gloc.c H5Gname.c H5Gnode.c H5Gobj.c H5Goh.c H5Groot.c H5Gstab.c H5Gtest.c \
        H5Gtraverse.c \
        H5HF.c H5HFbtree2.c H5HFcache.c H5HFdbg.c H5HFdblock.c H5HFdtable.c \
        H5HFhdr.c H5HFhuge.c H5HFiblock.c H5HFiter.c H5HFman.c H5HFsection.c \
        H5HFspace.c H5HFstat.c H5HFtest.c H5HFtiny.c \
        H5HG.c H5HGcache.c H5HGdbg.c H5HGquery.c \
        H5HL.c H5HLcache.c H5HLdbg.c H5HLint.c H5HLprfx.c H5HLdblk.c\
        H5HP.c H5I.c H5Itest.c H5L.c H5Lexternal.c H5lib_settings.c \
        H5MF.c H5MFaggr.c H5MFdbg.c H5MFsection.c \
        H5MM.c H5MP.c H5MPtest.c \
        H5O.c H5Odeprec.c H5Oainfo.c H5Oalloc.c H5Oattr.c \
        H5Oattribute.c H5Obogus.c H5Obtreek.c H5Ocache.c H5Ocache_image.c \
        H5Ochunk.c \
        H5Ocont.c H5Ocopy.c H5Odbg.c H5Odrvinfo.c H5Odtype.c H5Oefl.c \
        H5Ofill.c H5Oflush.c H5Ofsinfo.c H5Oginfo.c \
        H5Oint.c H5Olayout.c \
        H5Olinfo.c H5Olink.c H5Omessage.c H5Omtime.c \
        H5Oname.c H5Onull.c H5Opline.c H5Orefcount.c \
        H5Osdspace.c H5Oshared.c \
        H5Oshmesg.c \
        H5Ostab.c \
        H5Otest.c H5Ounknown.c \
        H5P.c H5Pacpl.c H5Pdapl.c H5Pdcpl.c \
        H5Pdeprec.c H5Pdxpl.c H5Pencdec.c \
        H5Pfapl.c H5Pfcpl.c H5Pfmpl.c \
        H5Pgcpl.c H5Pint.c \
        H5Plapl.c H5Plcpl.c H5Pocpl.c H5Pocpypl.c H5Pstrcpl.c H5Ptest.c \
        H5PB.c \
        H5PL.c H5PLint.c H5PLpath.c H5PLplugin_cache.c \
        H5R.c H5Rint.c H5Rdeprec.c \
        H5UC.c \
        H5RS.c \
        H5S.c H5Sall.c H5Sdbg.c H5Shyper.c H5Snone.c H5Spoint.c \
        H5Sselect.c H5Stest.c \
        H5SL.c \
        H5SM.c H5SMbtree2.c H5SMcache.c H5SMmessage.c H5SMtest.c \
        H5ST.c \
        H5T.c H5Tarray.c H5Tbit.c H5Tcommit.c H5Tcompound.c H5Tconv.c \
        H5Tcset.c H5Tdbg.c H5Tdeprec.c H5Tenum.c H5Tfields.c \
        H5Tfixed.c \
        H5Tfloat.c H5Tinit.c H5Tnative.c H5Toffset.c H5Toh.c \
        H5Topaque.c \
        H5Torder.c \
        H5Tpad.c H5Tprecis.c H5Tstrpad.c H5Tvisit.c H5Tvlen.c H5TS.c H5VM.c H5WB.c H5Z.c  \
        H5Zdeflate.c H5Zfletcher32.c H5Znbit.c H5Zshuffle.c \
        H5Zscaleoffset.c H5Zszip.c H5Ztrans.c

# Only compile parallel sources if necessary
if BUILD_PARALLEL_CONDITIONAL
    libhdf5_la_SOURCES += H5mpi.c H5ACmpio.c H5Cmpio.c H5Dmpio.c H5Fmpi.c H5FDmpi.c H5FDmpio.c H5Smpio.c
endif

# Only compile the direct VFD if necessary
if DIRECT_VFD_CONDITIONAL
    libhdf5_la_SOURCES += H5FDdirect.c
endif

# Only compile the mirror VFD if necessary
if MIRROR_VFD_CONDITIONAL
    libhdf5_la_SOURCES += H5FDmirror.c
endif

# Only compile the read-only S3 VFD if necessary
if ROS3_VFD_CONDITIONAL
    libhdf5_la_SOURCES += H5FDros3.c H5FDs3comms.c
endif

# Public headers
include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5version.h \
        H5Apublic.h H5ACpublic.h \
        H5Cpublic.h H5Dpublic.h \
        H5Epubgen.h H5Epublic.h H5Fpublic.h \
        H5FDpublic.h H5FDcore.h H5FDdirect.h H5FDfamily.h H5FDhdfs.h \
        H5FDlog.h H5FDmirror.h H5FDmpi.h H5FDmpio.h H5FDmulti.h H5FDros3.h \
        H5FDsec2.h H5FDsplitter.h H5FDstdio.h H5FDwindows.h \
        H5Gpublic.h  H5Ipublic.h H5Lpublic.h \
        H5MMpublic.h H5Opublic.h H5Ppublic.h \
        H5PLextern.h H5PLpublic.h \
        H5Rpublic.h H5Spublic.h H5Tpublic.h \
        H5Zpublic.h

# install libhdf5.settings in lib directory
settingsdir=$(libdir)
settings_DATA=libhdf5.settings

bin_SCRIPTS=$(H5CC_NAME)

# Number format detection
# The LD_LIBRARY_PATH setting is a kludge.
# Things should have been all set during H5detect making.
# Remove the generated .c file if errors occur unless HDF5_Make_Ignore
# is set to ignore the error.
H5Tinit.c: H5detect$(EXEEXT)
	LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) |                  \
		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
	$(RUNSERIAL) ./H5detect$(EXEEXT) > $@  ||                               \
	    (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||          \
	    ($(RM) $@ ; exit 1)

# Build configuration header file generation
# The LD_LIBRARY_PATH setting is a kludge.
# Things should have been all set during H5make_libsettings making.
# Remove the generated .c file if errors occur unless HDF5_Make_Ignore
# is set to ignore the error.
H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings
	LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) |                  \
		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
	$(RUNSERIAL) ./H5make_libsettings$(EXEEXT) > $@  ||                               \
	    (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||          \
	    ($(RM) $@ ; exit 1)

# Error header generation
#
# Actually, H5Einit.h, H5Eterm.h, H5Edefin.h and H5Epubgen.h all
# depend on H5err.txt, but the perl script generates them all, so just
# list one here.
$(top_srcdir)/src/H5Edefin.h: $(top_srcdir)/src/H5err.txt
	perl $(top_srcdir)/bin/make_err $?

# API version macro generation
$(top_srcdir)/src/H5version.h: $(top_srcdir)/src/H5vers.txt
	perl $(top_srcdir)/bin/make_vers $?

# Assignment overflow macro generation
$(top_srcdir)/src/H5overflow.h: $(top_srcdir)/src/H5overflow.txt
	perl $(top_srcdir)/bin/make_overflow $?

# Add TRACE macros to library source files.  This is done via the trace script
# in the hdf5/bin directory.  If the file contains HDF5 API macros, a "clean"
# version of the source file is saved with a tilde (~) after its name and
# tracing information is inserted.  trace should have no effect on files
# without HDF5 macros.
.PHONY: trace

trace: $(libhdf5_la_SOURCES)
	@for dep in $? dummy; do                                          \
	 if test $$dep != "dummy" -a -n "$(PERL)"; then                      \
	  case "$$dep" in                                                 \
	   *.c)                                                           \
	    $(TRACE) $$dep;                                               \
	    ;;                                                            \
	  esac;                                                           \
	 fi;                                                              \
	done

#install-exec-local:
#	@$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
#uninstall-local:
#	@$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)

include $(top_srcdir)/config/conclude.am