hdf5-pure-rust 0.3.10

Pure Rust implementation of the HDF5 file format
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
use std::io::{Seek, SeekFrom, Write};

use crate::error::{Error, Result};
use crate::format::btree_v2::BTreeV2Header;
use crate::format::checksum::checksum_metadata;
use crate::format::fractal_heap::FractalHeapHeader;
use crate::format::messages::attribute::AttributeMessage;
use crate::format::messages::attribute_info::AttributeInfoMessage;
use crate::format::object_header::{
    self, HDR_ATTR_STORE_PHASE_CHANGE, HDR_CHUNK0_SIZE_MASK, HDR_STORE_TIMES, HDR_V2_KNOWN_FLAGS,
};

use super::MutableFile;

#[derive(Debug)]
struct CompactAttributeMessageLocation {
    msg_type_offset: u64,
    msg_data_offset: u64,
    oh_start: u64,
    oh_check_len: usize,
    raw_data: Vec<u8>,
}

#[derive(Debug)]
struct DenseAttributeLocation {
    attr_info_addr: u64,
    heap: FractalHeapHeader,
    btree: BTreeV2Header,
    leaf_records: Vec<u8>,
    record_index: usize,
    direct_block_addr: u64,
    direct_block_size: u64,
    object_offset: u64,
    raw_data: Vec<u8>,
}

impl MutableFile {
    /// Delete a compact root attribute by name.
    ///
    /// This is an in-place object-header edit for compact attributes. Dense
    /// attribute storage requires fractal-heap/B-tree mutation and is rejected
    /// explicitly for now.
    pub fn delete_root_attr(&mut self, name: &str) -> Result<()> {
        self.delete_attr_at(self.superblock.root_addr, name)
    }

    /// Delete a compact group attribute by group path and attribute name.
    pub fn delete_group_attr(&mut self, group_path: &str, name: &str) -> Result<()> {
        let group = self.group(group_path)?;
        self.delete_attr_at(group.addr(), name)
    }

    /// Delete a compact dataset attribute by dataset path and attribute name.
    pub fn delete_dataset_attr(&mut self, dataset_path: &str, name: &str) -> Result<()> {
        let dataset = self.dataset(dataset_path)?;
        self.delete_attr_at(dataset.addr(), name)
    }

    /// Rename a compact root attribute in-place.
    ///
    /// The new name must fit in the existing compact attribute name field so
    /// the compact object-header message size remains unchanged.
    pub fn rename_root_attr(&mut self, old_name: &str, new_name: &str) -> Result<()> {
        self.rename_attr_at(self.superblock.root_addr, old_name, new_name)
    }

    /// Rename a compact group attribute in-place.
    pub fn rename_group_attr(
        &mut self,
        group_path: &str,
        old_name: &str,
        new_name: &str,
    ) -> Result<()> {
        let group = self.group(group_path)?;
        self.rename_attr_at(group.addr(), old_name, new_name)
    }

    /// Rename a compact dataset attribute in-place.
    pub fn rename_dataset_attr(
        &mut self,
        dataset_path: &str,
        old_name: &str,
        new_name: &str,
    ) -> Result<()> {
        let dataset = self.dataset(dataset_path)?;
        self.rename_attr_at(dataset.addr(), old_name, new_name)
    }

    fn delete_attr_at(&mut self, object_addr: u64, name: &str) -> Result<()> {
        match self.find_compact_attribute_message_in_oh(object_addr, name) {
            Ok(location) => {
                self.write_handle
                    .seek(SeekFrom::Start(location.msg_type_offset))?;
                self.write_handle
                    .write_all(&[object_header::MSG_NIL as u8])?;
                self.rewrite_oh_checksum(location.oh_start, location.oh_check_len)?;
            }
            Err(Error::Unsupported(message)) if message.contains("dense attributes") => {
                let location = self.find_dense_attribute_location(object_addr, name, None)?;
                self.delete_dense_attribute(location)?;
            }
            Err(err) => return Err(err),
        }
        self.write_handle.flush()?;
        self.reopen_reader()?;
        Ok(())
    }

    fn rename_attr_at(&mut self, object_addr: u64, old_name: &str, new_name: &str) -> Result<()> {
        if new_name.is_empty() {
            return Err(Error::InvalidFormat(
                "attribute name cannot be empty".into(),
            ));
        }
        if old_name == new_name {
            return Ok(());
        }
        match self.find_compact_attribute_rename_location(object_addr, old_name, new_name) {
            Ok(mut location) => {
                let (name_offset, name_size) =
                    Self::compact_attribute_name_field(&location.raw_data)?;
                if new_name.len() + 1 != name_size {
                    return Err(Error::Unsupported(
                        "in-place compact attribute rename cannot grow or shrink the encoded name field"
                            .into(),
                    ));
                }
                let name_offset_u64 = Self::usize_to_u64(name_offset, "attribute name offset")?;
                let file_name_offset = location
                    .msg_data_offset
                    .checked_add(name_offset_u64)
                    .ok_or_else(|| Error::InvalidFormat("attribute name offset overflow".into()))?;

                let encoded_name = encode_attribute_name_in_place(
                    &mut location.raw_data,
                    name_offset,
                    name_size,
                    new_name,
                )?;
                self.write_handle.seek(SeekFrom::Start(file_name_offset))?;
                self.write_handle.write_all(encoded_name)?;
                self.rewrite_oh_checksum(location.oh_start, location.oh_check_len)?;
            }
            Err(Error::Unsupported(message)) if message.contains("dense attributes") => {
                let location =
                    self.find_dense_attribute_location(object_addr, old_name, Some(new_name))?;
                self.rename_dense_attribute(location, new_name)?;
            }
            Err(err) => return Err(err),
        }
        self.write_handle.flush()?;
        self.reopen_reader()?;
        Ok(())
    }

    fn compact_attribute_name_field(raw: &[u8]) -> Result<(usize, usize)> {
        if raw.len() < 4 {
            return Err(Error::InvalidFormat("attribute message too short".into()));
        }
        let version = raw
            .first()
            .copied()
            .ok_or_else(|| Error::InvalidFormat("attribute message too short".into()))?;
        let name_size = usize::from(read_u16_le_at(raw, 2, "attribute name size")?);
        if name_size == 0 {
            return Err(Error::InvalidFormat(
                "attribute message name length is zero".into(),
            ));
        }
        let offset: usize = match version {
            1 | 2 => 8,
            3 => 9,
            other => Err(Error::InvalidFormat(format!(
                "attribute message version {other}"
            )))?,
        };
        let end = offset
            .checked_add(name_size)
            .ok_or_else(|| Error::InvalidFormat("attribute name field overflow".into()))?;
        if end > raw.len() {
            return Err(Error::InvalidFormat(
                "attribute name field exceeds message".into(),
            ));
        }
        Ok((offset, name_size))
    }

    fn find_compact_attribute_message_in_oh(
        &self,
        oh_addr: u64,
        name: &str,
    ) -> Result<CompactAttributeMessageLocation> {
        self.find_compact_attribute_in_oh(oh_addr, name, None)
    }

    fn find_compact_attribute_rename_location(
        &self,
        oh_addr: u64,
        old_name: &str,
        new_name: &str,
    ) -> Result<CompactAttributeMessageLocation> {
        self.find_compact_attribute_in_oh(oh_addr, old_name, Some(new_name))
    }

    fn find_compact_attribute_in_oh(
        &self,
        oh_addr: u64,
        target_name: &str,
        reject_duplicate_name: Option<&str>,
    ) -> Result<CompactAttributeMessageLocation> {
        let mut guard = self.inner.lock();
        let reader = &mut guard.reader;
        reader.seek(oh_addr)?;

        let mut first_bytes = [0u8; 4];
        reader.read_bytes_into(&mut first_bytes)?;
        if first_bytes != [b'O', b'H', b'D', b'R'] {
            return Err(Error::Unsupported(
                "attribute mutation currently supports only v2 object headers".into(),
            ));
        }

        let version = reader.read_u8()?;
        if version != 2 {
            return Err(Error::Unsupported(
                "attribute mutation currently supports only v2 object headers".into(),
            ));
        }

        let flags = reader.read_u8()?;
        if flags & !HDR_V2_KNOWN_FLAGS != 0 {
            return Err(Error::InvalidFormat(format!(
                "object header v2 flags contain reserved bits: {flags:#04x}"
            )));
        }
        if flags & HDR_STORE_TIMES != 0 {
            reader.skip(16)?;
        }
        if flags & HDR_ATTR_STORE_PHASE_CHANGE != 0 {
            reader.skip(4)?;
        }

        let chunk0_size_bytes = 1u8 << (flags & HDR_CHUNK0_SIZE_MASK);
        let chunk0_data_size = reader.read_uint(chunk0_size_bytes)?;
        let chunk0_data_start = reader.position()?;
        let chunk0_data_end = chunk0_data_start
            .checked_add(chunk0_data_size)
            .ok_or_else(|| Error::InvalidFormat("object-header chunk range overflow".into()))?;
        let oh_check_len = usize::try_from(chunk0_data_end - oh_addr)
            .map_err(|_| Error::InvalidFormat("object-header checksum range overflow".into()))?;

        let mut has_dense_attrs = false;
        let mut found = None;
        while reader.position()? < chunk0_data_end {
            let msg_header_pos = reader.position()?;
            if msg_header_pos
                .checked_add(4)
                .is_none_or(|end| end > chunk0_data_end)
            {
                break;
            }

            let msg_type = u16::from(reader.read_u8()?);
            let msg_size = usize::from(reader.read_u16()?);
            let _msg_flags = reader.read_u8()?;
            if flags & object_header::HDR_ATTR_CRT_ORDER_TRACKED != 0 {
                reader.skip(2)?;
            }

            let msg_data_offset = reader.position()?;
            let msg_size_u64 = Self::usize_to_u64(msg_size, "object-header message size")?;
            if msg_data_offset
                .checked_add(msg_size_u64)
                .is_none_or(|end| end > chunk0_data_end)
            {
                return Err(Error::InvalidFormat(
                    "object-header message payload exceeds chunk".into(),
                ));
            }

            if msg_type == object_header::MSG_ATTRIBUTE {
                let mut data = vec![0u8; msg_size];
                reader.read_bytes_into(&mut data)?;
                let attr = AttributeMessage::decode(&data)?;
                if reject_duplicate_name.is_some_and(|name| attr.name == name) {
                    return Err(Error::InvalidFormat(format!(
                        "attribute '{}' already exists",
                        attr.name
                    )));
                }
                if attr.name == target_name {
                    let location = CompactAttributeMessageLocation {
                        msg_type_offset: msg_header_pos,
                        msg_data_offset,
                        oh_start: oh_addr,
                        oh_check_len,
                        raw_data: data,
                    };
                    if reject_duplicate_name.is_none() {
                        return Ok(location);
                    }
                    found = Some(location);
                }
            } else {
                if msg_type == object_header::MSG_ATTR_INFO {
                    has_dense_attrs = true;
                }
                reader.skip(msg_size_u64)?;
            }
        }

        if let Some(location) = found {
            return Ok(location);
        }

        if has_dense_attrs {
            Err(Error::Unsupported(
                "mutating dense attributes is not implemented".into(),
            ))
        } else {
            Err(Error::InvalidFormat(format!(
                "attribute '{target_name}' not found"
            )))
        }
    }

    fn find_dense_attribute_location(
        &self,
        object_addr: u64,
        target_name: &str,
        reject_duplicate_name: Option<&str>,
    ) -> Result<DenseAttributeLocation> {
        let mut guard = self.inner.lock();
        let attr_info =
            Self::read_dense_attribute_info_message(&mut guard.reader, object_addr, target_name)?;
        if !attr_info.has_dense_storage() {
            return Err(Error::InvalidFormat(format!(
                "attribute '{target_name}' not found"
            )));
        }
        if attr_info.corder_btree_addr.is_some() {
            return Err(Error::Unsupported(
                "mutating creation-order indexed dense attributes is not implemented".into(),
            ));
        }

        let heap = FractalHeapHeader::read_at(&mut guard.reader, attr_info.fractal_heap_addr)?;
        if heap.io_filter_len != 0 {
            return Err(Error::Unsupported(
                "mutating filtered dense attribute heaps is not implemented".into(),
            ));
        }

        let btree = BTreeV2Header::read_at(&mut guard.reader, attr_info.name_btree_addr)?;
        if btree.tree_type != 8 || btree.depth != 0 {
            return Err(Error::Unsupported(
                "mutating non-leaf dense attribute name indexes is not implemented".into(),
            ));
        }
        let mut leaf_records = Vec::new();
        Self::read_dense_attribute_leaf_records_into(&mut guard.reader, &btree, &mut leaf_records)?;
        let heap_id_len = usize::from(heap.heap_id_len);
        let mut found = None;
        let record_size = usize::from(btree.record_size);
        for (idx, record) in leaf_records.chunks_exact(record_size).enumerate() {
            let heap_id = checked_window(record, 0, heap_id_len, "dense attribute heap ID")?;
            let raw_data = heap.read_managed_object(&mut guard.reader, heap_id)?;
            let attr = AttributeMessage::decode(&raw_data)?;
            if reject_duplicate_name.is_some_and(|name| attr.name == name) {
                return Err(Error::InvalidFormat(format!(
                    "attribute '{}' already exists",
                    attr.name
                )));
            }
            if attr.name == target_name {
                let object_location = heap.managed_object_location(&mut guard.reader, heap_id)?;
                found = Some((idx, object_location, raw_data));
            }
        }

        let (record_index, object_location, raw_data) = found
            .ok_or_else(|| Error::InvalidFormat(format!("attribute '{target_name}' not found")))?;
        Ok(DenseAttributeLocation {
            attr_info_addr: attr_info.name_btree_addr,
            heap,
            btree,
            leaf_records,
            record_index,
            direct_block_addr: object_location.block_addr,
            direct_block_size: object_location.block_size,
            object_offset: object_location.object_offset,
            raw_data,
        })
    }

    fn delete_dense_attribute(&mut self, mut location: DenseAttributeLocation) -> Result<()> {
        let record_size = usize::from(location.btree.record_size);
        let start = location
            .record_index
            .checked_mul(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        let end = start
            .checked_add(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        if end > location.leaf_records.len() {
            return Err(Error::InvalidFormat(
                "dense attribute record index is invalid".into(),
            ));
        }
        location.leaf_records.copy_within(end.., start);
        location
            .leaf_records
            .truncate(location.leaf_records.len() - record_size);
        self.rewrite_dense_attribute_name_index(&location)
    }

    fn rename_dense_attribute(
        &mut self,
        mut location: DenseAttributeLocation,
        new_name: &str,
    ) -> Result<()> {
        let (name_offset, name_size) = Self::compact_attribute_name_field(&location.raw_data)?;
        if new_name.len() + 1 != name_size {
            return Err(Error::Unsupported(
                "in-place dense attribute rename cannot grow or shrink the encoded name field"
                    .into(),
            ));
        }

        let name_offset_u64 = Self::usize_to_u64(name_offset, "dense attribute name offset")?;
        let file_name_offset = location
            .direct_block_addr
            .checked_add(location.object_offset)
            .and_then(|offset| offset.checked_add(name_offset_u64))
            .ok_or_else(|| Error::InvalidFormat("dense attribute name offset overflow".into()))?;
        self.write_handle.seek(SeekFrom::Start(file_name_offset))?;
        {
            let encoded_name = encode_attribute_name_in_place(
                &mut location.raw_data,
                name_offset,
                name_size,
                new_name,
            )?;
            self.write_handle.write_all(encoded_name)?;
        }

        let record_size = usize::from(location.btree.record_size);
        let record_start = location
            .record_index
            .checked_mul(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        let record_end = record_start
            .checked_add(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        let record = location
            .leaf_records
            .get_mut(record_start..record_end)
            .ok_or_else(|| {
                Error::InvalidFormat("dense attribute record index is invalid".into())
            })?;
        let hash_pos = dense_attribute_record_hash_pos(&location.heap, record)?;
        let hash_end = hash_pos
            .checked_add(4)
            .ok_or_else(|| Error::InvalidFormat("dense attribute hash offset overflow".into()))?;
        record[hash_pos..hash_end].copy_from_slice(&dense_name_hash(new_name).to_le_bytes());
        Self::reposition_dense_attribute_record_by_hash(
            &location.heap,
            &mut location.leaf_records,
            location.record_index,
            record_size,
        )?;

        let encoded_name = checked_window(
            &location.raw_data,
            name_offset,
            name_size,
            "dense attribute encoded name",
        )?;
        self.rewrite_dense_attribute_direct_block_checksum(
            &location.heap,
            location.direct_block_addr,
            location.direct_block_size,
            file_name_offset,
            encoded_name,
        )?;
        self.rewrite_dense_attribute_name_index(&location)
    }

    fn rewrite_dense_attribute_name_index(
        &mut self,
        location: &DenseAttributeLocation,
    ) -> Result<()> {
        let record_size = usize::from(location.btree.record_size);
        if record_size == 0 || !location.leaf_records.len().is_multiple_of(record_size) {
            return Err(Error::InvalidFormat(
                "dense attribute records have inconsistent sizes".into(),
            ));
        }
        let record_count = location.leaf_records.len() / record_size;
        let record_count_u16 = Self::usize_to_u16(record_count, "dense attribute record count")?;
        let record_count_u64 = Self::usize_to_u64(record_count, "dense attribute record count")?;

        let mut leaf = Vec::with_capacity(
            6usize
                .checked_add(location.leaf_records.len())
                .and_then(|len| len.checked_add(4))
                .ok_or_else(|| Error::InvalidFormat("dense attribute leaf size overflow".into()))?,
        );
        leaf.extend_from_slice(b"BTLF");
        leaf.push(0);
        leaf.push(location.btree.tree_type);
        leaf.extend_from_slice(&location.leaf_records);
        let checksum = checksum_metadata(&leaf);
        leaf.extend_from_slice(&checksum.to_le_bytes());
        self.write_handle
            .seek(SeekFrom::Start(location.btree.root_addr))?;
        self.write_handle.write_all(&leaf)?;

        let sa = usize::from(self.superblock.sizeof_addr);
        let ss = usize::from(self.superblock.sizeof_size);
        let header_capacity = 22usize
            .checked_add(sa)
            .and_then(|len| len.checked_add(ss))
            .ok_or_else(|| {
                Error::InvalidFormat("dense attribute B-tree header size overflow".into())
            })?;
        let mut header = Vec::with_capacity(header_capacity);
        header.extend_from_slice(b"BTHD");
        header.push(0);
        header.push(location.btree.tree_type);
        header.extend_from_slice(&location.btree.node_size.to_le_bytes());
        header.extend_from_slice(&location.btree.record_size.to_le_bytes());
        header.extend_from_slice(&0u16.to_le_bytes());
        header.push(location.btree.split_pct);
        header.push(location.btree.merge_pct);
        let mut scratch = [0u8; 8];
        header.extend_from_slice(Self::encode_uint_le_into(
            location.btree.root_addr,
            &mut scratch,
            sa,
            "dense attribute B-tree root address",
        )?);
        header.extend_from_slice(&record_count_u16.to_le_bytes());
        header.extend_from_slice(Self::encode_uint_le_into(
            record_count_u64,
            &mut scratch,
            ss,
            "dense attribute B-tree total record count",
        )?);
        let checksum = checksum_metadata(&header);
        header.extend_from_slice(&checksum.to_le_bytes());
        self.write_handle
            .seek(SeekFrom::Start(location.attr_info_addr))?;
        self.write_handle.write_all(&header)?;
        Ok(())
    }

    fn read_dense_attribute_info_message<R: std::io::Read + Seek>(
        reader: &mut crate::io::reader::HdfReader<R>,
        oh_addr: u64,
        target_name: &str,
    ) -> Result<AttributeInfoMessage> {
        reader.seek(oh_addr)?;

        let mut first_bytes = [0u8; 4];
        reader.read_bytes_into(&mut first_bytes)?;
        if first_bytes != [b'O', b'H', b'D', b'R'] {
            return Err(Error::Unsupported(
                "attribute mutation currently supports only v2 object headers".into(),
            ));
        }

        let version = reader.read_u8()?;
        if version != 2 {
            return Err(Error::Unsupported(
                "attribute mutation currently supports only v2 object headers".into(),
            ));
        }

        let flags = reader.read_u8()?;
        if flags & !HDR_V2_KNOWN_FLAGS != 0 {
            return Err(Error::InvalidFormat(format!(
                "object header v2 flags contain reserved bits: {flags:#04x}"
            )));
        }
        if flags & HDR_STORE_TIMES != 0 {
            reader.skip(16)?;
        }
        if flags & HDR_ATTR_STORE_PHASE_CHANGE != 0 {
            reader.skip(4)?;
        }

        let chunk0_size_bytes = 1u8 << (flags & HDR_CHUNK0_SIZE_MASK);
        let chunk0_data_size = reader.read_uint(chunk0_size_bytes)?;
        let chunk0_data_start = reader.position()?;
        let chunk0_data_end = chunk0_data_start
            .checked_add(chunk0_data_size)
            .ok_or_else(|| Error::InvalidFormat("object-header chunk range overflow".into()))?;

        while reader.position()? < chunk0_data_end {
            let msg_header_pos = reader.position()?;
            if msg_header_pos
                .checked_add(4)
                .is_none_or(|end| end > chunk0_data_end)
            {
                break;
            }

            let msg_type = u16::from(reader.read_u8()?);
            let msg_size = usize::from(reader.read_u16()?);
            let _msg_flags = reader.read_u8()?;
            if flags & object_header::HDR_ATTR_CRT_ORDER_TRACKED != 0 {
                reader.skip(2)?;
            }

            let msg_data_offset = reader.position()?;
            let msg_size_u64 = Self::usize_to_u64(msg_size, "object-header message size")?;
            if msg_data_offset
                .checked_add(msg_size_u64)
                .is_none_or(|end| end > chunk0_data_end)
            {
                return Err(Error::InvalidFormat(
                    "object-header message payload exceeds chunk".into(),
                ));
            }

            if msg_type == object_header::MSG_ATTR_INFO {
                let mut data = vec![0u8; msg_size];
                reader.read_bytes_into(&mut data)?;
                return AttributeInfoMessage::decode(&data, reader.sizeof_addr());
            }
            reader.skip(msg_size_u64)?;
        }

        Err(Error::InvalidFormat(format!(
            "attribute '{target_name}' not found"
        )))
    }

    fn read_dense_attribute_leaf_records_into<R: std::io::Read + Seek>(
        reader: &mut crate::io::reader::HdfReader<R>,
        btree: &BTreeV2Header,
        records: &mut Vec<u8>,
    ) -> Result<()> {
        let record_size = usize::from(btree.record_size);
        let record_count = usize::from(btree.root_nrecords);
        let records_len = record_size
            .checked_mul(record_count)
            .ok_or_else(|| Error::InvalidFormat("dense attribute leaf records overflow".into()))?;
        let check_len = 6usize
            .checked_add(records_len)
            .ok_or_else(|| Error::InvalidFormat("dense attribute leaf size overflow".into()))?;
        let total_len = check_len
            .checked_add(4)
            .ok_or_else(|| Error::InvalidFormat("dense attribute leaf size overflow".into()))?;

        records.clear();
        records.resize(total_len, 0);
        reader.seek(btree.root_addr)?;
        reader.read_bytes_into(records)?;
        if records.get(..4) != Some(&b"BTLF"[..]) {
            return Err(Error::InvalidFormat(
                "invalid dense attribute B-tree leaf magic".into(),
            ));
        }
        if records.get(4).copied() != Some(0) || records.get(5).copied() != Some(btree.tree_type) {
            return Err(Error::InvalidFormat(
                "dense attribute B-tree leaf header does not match index".into(),
            ));
        }
        let stored = read_u32_le_at(records, check_len, "dense attribute leaf checksum")?;
        let computed = checksum_metadata(&records[..check_len]);
        if stored != computed {
            return Err(Error::InvalidFormat(format!(
                "dense attribute leaf checksum mismatch: stored={stored:#010x}, computed={computed:#010x}"
            )));
        }
        records.drain(..6);
        records.truncate(records_len);
        Ok(())
    }

    fn reposition_dense_attribute_record_by_hash(
        heap: &FractalHeapHeader,
        records: &mut [u8],
        record_index: usize,
        record_size: usize,
    ) -> Result<()> {
        if record_size == 0 || !records.len().is_multiple_of(record_size) {
            return Err(Error::InvalidFormat(
                "dense attribute records have inconsistent sizes".into(),
            ));
        }
        let record_count = records.len() / record_size;
        if record_index >= record_count {
            return Err(Error::InvalidFormat(
                "dense attribute record index is invalid".into(),
            ));
        }
        let start = record_index
            .checked_mul(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        let end = start
            .checked_add(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        let record = records.get(start..end).ok_or_else(|| {
            Error::InvalidFormat("dense attribute record index is invalid".into())
        })?;
        let hash_pos = dense_attribute_record_hash_pos(heap, record)?;
        let changed_hash = read_u32_le_at(record, hash_pos, "dense attribute record hash")?;

        let mut insert_index = record_count - 1;
        let mut logical_idx = 0usize;
        for (idx, record) in records.chunks_exact(record_size).enumerate() {
            if idx == record_index {
                continue;
            }
            let hash_pos = dense_attribute_record_hash_pos(heap, record)?;
            let hash = read_u32_le_at(record, hash_pos, "dense attribute record hash")?;
            if changed_hash < hash {
                insert_index = logical_idx;
                break;
            }
            logical_idx += 1;
        }

        if insert_index == record_index {
            return Ok(());
        }
        let insert_pos = insert_index
            .checked_mul(record_size)
            .ok_or_else(|| Error::InvalidFormat("dense attribute record offset overflow".into()))?;
        if insert_index < record_index {
            records[insert_pos..end].rotate_right(record_size);
        } else {
            let rotate_end = insert_pos.checked_add(record_size).ok_or_else(|| {
                Error::InvalidFormat("dense attribute record offset overflow".into())
            })?;
            records[start..rotate_end].rotate_left(record_size);
        }
        Ok(())
    }

    fn rewrite_dense_attribute_direct_block_checksum(
        &mut self,
        heap: &FractalHeapHeader,
        block_addr: u64,
        block_size: u64,
        patched_addr: u64,
        patched_data: &[u8],
    ) -> Result<()> {
        if !heap.has_checksum {
            return Ok(());
        }
        let block_size = usize::try_from(block_size)
            .map_err(|_| Error::InvalidFormat("dense attribute direct block too large".into()))?;
        let checksum_pos = direct_block_checksum_pos(heap, self.superblock.sizeof_addr)?;
        let checksum_end = checksum_pos
            .checked_add(4)
            .ok_or_else(|| Error::InvalidFormat("direct block checksum offset overflow".into()))?;
        let mut guard = self.inner.lock();
        guard.reader.seek(block_addr)?;
        let mut block = vec![0u8; block_size];
        guard.reader.read_bytes_into(&mut block)?;
        drop(guard);
        let patch_start = patched_addr
            .checked_sub(block_addr)
            .ok_or_else(|| Error::InvalidFormat("direct block patch address underflow".into()))?;
        let patch_start = usize::try_from(patch_start)
            .map_err(|_| Error::InvalidFormat("direct block patch offset too large".into()))?;
        let patch_end = patch_start
            .checked_add(patched_data.len())
            .ok_or_else(|| Error::InvalidFormat("direct block patch range overflow".into()))?;
        block
            .get_mut(patch_start..patch_end)
            .ok_or_else(|| Error::InvalidFormat("direct block patch exceeds block".into()))?
            .copy_from_slice(patched_data);
        let checksum_window = block.get_mut(checksum_pos..checksum_end).ok_or_else(|| {
            Error::InvalidFormat("direct block checksum field is truncated".into())
        })?;
        checksum_window.fill(0);
        let checksum = checksum_metadata(&block);
        let checksum_pos_u64 = Self::usize_to_u64(checksum_pos, "direct block checksum position")?;
        self.write_handle.seek(SeekFrom::Start(
            block_addr.checked_add(checksum_pos_u64).ok_or_else(|| {
                Error::InvalidFormat("direct block checksum address overflow".into())
            })?,
        ))?;
        self.write_handle.write_all(&checksum.to_le_bytes())?;
        Ok(())
    }
}

fn checked_window<'a>(raw: &'a [u8], pos: usize, len: usize, context: &str) -> Result<&'a [u8]> {
    let end = pos
        .checked_add(len)
        .ok_or_else(|| Error::InvalidFormat(format!("{context} offset overflow")))?;
    raw.get(pos..end)
        .ok_or_else(|| Error::InvalidFormat(format!("{context} is truncated")))
}

fn read_u16_le_at(raw: &[u8], pos: usize, context: &str) -> Result<u16> {
    let bytes = checked_window(raw, pos, 2, context)?;
    let bytes: [u8; 2] = bytes
        .try_into()
        .map_err(|_| Error::InvalidFormat(format!("{context} is truncated")))?;
    Ok(u16::from_le_bytes(bytes))
}

fn read_u32_le_at(raw: &[u8], pos: usize, context: &str) -> Result<u32> {
    let bytes = checked_window(raw, pos, 4, context)?;
    let bytes: [u8; 4] = bytes
        .try_into()
        .map_err(|_| Error::InvalidFormat(format!("{context} is truncated")))?;
    Ok(u32::from_le_bytes(bytes))
}

fn encode_attribute_name_in_place<'a>(
    raw: &'a mut [u8],
    name_offset: usize,
    name_size: usize,
    name: &str,
) -> Result<&'a [u8]> {
    let name_field = raw
        .get_mut(
            name_offset..name_offset.checked_add(name_size).ok_or_else(|| {
                Error::InvalidFormat("attribute name field offset overflow".into())
            })?,
        )
        .ok_or_else(|| Error::InvalidFormat("attribute name field exceeds message".into()))?;
    name_field.fill(0);
    name_field[..name.len()].copy_from_slice(name.as_bytes());
    Ok(name_field)
}

fn direct_block_checksum_pos(heap: &FractalHeapHeader, sizeof_addr: u8) -> Result<usize> {
    let offset_bytes = fractal_heap_offset_width(heap)?;
    5usize
        .checked_add(usize::from(sizeof_addr))
        .and_then(|pos| pos.checked_add(offset_bytes))
        .ok_or_else(|| Error::InvalidFormat("direct block checksum position overflow".into()))
}

fn fractal_heap_offset_width(heap: &FractalHeapHeader) -> Result<usize> {
    let max_heap_size = usize::from(heap.max_heap_size);
    let offset_bytes = max_heap_size
        .checked_add(7)
        .ok_or_else(|| Error::InvalidFormat("dense attribute heap offset width overflow".into()))?
        / 8;
    if offset_bytes == 0 || offset_bytes > 8 {
        return Err(Error::Unsupported(format!(
            "dense attribute heap offset width {offset_bytes} is unsupported"
        )));
    }
    Ok(offset_bytes)
}

fn dense_attribute_record_hash_pos(heap: &FractalHeapHeader, record: &[u8]) -> Result<usize> {
    let heap_id_len = usize::from(heap.heap_id_len);
    let hash_pos = heap_id_len
        .checked_add(1)
        .and_then(|pos| pos.checked_add(4))
        .ok_or_else(|| Error::InvalidFormat("dense attribute hash position overflow".into()))?;
    checked_window(record, hash_pos, 4, "dense attribute record hash")?;
    Ok(hash_pos)
}

fn dense_name_hash(name: &str) -> u32 {
    crate::format::checksum::checksum_lookup3(name.as_bytes(), 0)
}

#[cfg(test)]
mod tests {
    use super::*;

    #[test]
    fn checked_window_rejects_offset_overflow() {
        let err = checked_window(&[], usize::MAX, 1, "attribute mutation test").unwrap_err();
        assert!(
            err.to_string()
                .contains("attribute mutation test offset overflow"),
            "unexpected error: {err}"
        );
    }

    #[test]
    fn fractal_heap_offset_width_rejects_invalid_widths() {
        let heap = FractalHeapHeader {
            heap_addr: 0,
            heap_id_len: 0,
            io_filter_len: 0,
            flags: 0,
            max_managed_obj_size: 0,
            table_width: 0,
            start_block_size: 0,
            max_direct_block_size: 0,
            max_heap_size: 0,
            start_root_rows: 0,
            root_block_addr: 0,
            current_root_rows: 0,
            num_managed_objects: 0,
            has_checksum: false,
            sizeof_addr: 8,
            sizeof_size: 8,
            huge_btree_addr: 0,
            root_direct_filtered_size: None,
            root_direct_filter_mask: 0,
            filter_pipeline: None,
        };
        assert!(fractal_heap_offset_width(&heap).is_err());

        let mut heap = heap;
        heap.max_heap_size = 65;
        assert!(fractal_heap_offset_width(&heap).is_err());

        heap.max_heap_size = 64;
        assert_eq!(fractal_heap_offset_width(&heap).unwrap(), 8);
    }
}