hdf5-pure-rust 0.3.10

Pure Rust implementation of the HDF5 file format
Documentation
//! Fractal heap header — mirrors libhdf5's `H5HFhdr.c` plus the
//! header-half of `H5HFcache.c` (`H5HF__cache_hdr_deserialize`).

use std::io::{Read, Seek};

use crate::error::{Error, Result};
use crate::format::messages::filter_pipeline::FilterPipelineMessage;
use crate::io::reader::HdfReader;

use super::{verify_metadata_checksum, FractalHeapHeader, FRHP_MAGIC};

impl FractalHeapHeader {
    pub fn read_at<R: Read + Seek>(reader: &mut HdfReader<R>, addr: u64) -> Result<Self> {
        reader.seek(addr)?;

        let mut magic = [0; 4];
        reader.read_bytes_into(&mut magic)?;
        if magic != FRHP_MAGIC {
            return Err(Error::InvalidFormat("invalid fractal heap magic".into()));
        }

        let version = reader.read_u8()?;
        if version != 0 {
            return Err(Error::Unsupported(format!(
                "fractal heap version {version}"
            )));
        }

        let heap_id_len = reader.read_u16()?;
        let io_filter_len = reader.read_u16()?;
        let flags = reader.read_u8()?;

        // "Huge" object info
        let max_managed_obj_size = reader.read_u32()?;
        let _next_huge_id = reader.read_length()?; // sizeof_size
        let huge_btree_addr = reader.read_addr()?; // sizeof_addr

        // Managed free space
        let _total_man_free = reader.read_length()?; // sizeof_size
        let _fs_addr = reader.read_addr()?; // sizeof_addr

        // Heap statistics
        let _man_size = reader.read_length()?;
        let _man_alloc_size = reader.read_length()?;
        let _man_iter_off = reader.read_length()?;
        let num_managed_objects = reader.read_length()?;
        let _huge_size = reader.read_length()?;
        let _huge_nobjs = reader.read_length()?;
        let _tiny_size = reader.read_length()?;
        let _tiny_nobjs = reader.read_length()?;

        // Doubling table info
        let table_width = reader.read_u16()?;
        let start_block_size = reader.read_length()?;
        let max_direct_block_size = reader.read_length()?;
        let max_heap_size = reader.read_u16()?;
        let start_root_rows = reader.read_u16()?;
        let root_block_addr = reader.read_addr()?;
        let current_root_rows = reader.read_u16()?;

        let has_checksum = flags & 0x02 != 0;

        // If I/O filters present, skip filter info
        let mut root_direct_filtered_size = None;
        let mut root_direct_filter_mask = 0;
        let mut filter_pipeline = None;
        if io_filter_len > 0 {
            root_direct_filtered_size = Some(reader.read_length()?);
            root_direct_filter_mask = reader.read_u32()?;
            let pipeline_len = usize::from(io_filter_len);
            let mut pipeline_bytes = Vec::new();
            pipeline_bytes
                .try_reserve_exact(pipeline_len)
                .map_err(|err| {
                    Error::InvalidFormat(format!(
                        "fractal heap filter pipeline allocation failed: {err}"
                    ))
                })?;
            pipeline_bytes.resize(pipeline_len, 0);
            reader.read_bytes_into(&mut pipeline_bytes)?;
            filter_pipeline = Some(FilterPipelineMessage::decode(&pipeline_bytes)?);
        }

        let checksum_span = reader
            .position()?
            .checked_sub(addr)
            .ok_or_else(|| Error::InvalidFormat("fractal heap checksum span underflow".into()))?;
        verify_metadata_checksum(reader, addr, checksum_span, "fractal heap header")?;

        validate_doubling_table_geometry(
            table_width,
            start_block_size,
            max_direct_block_size,
            max_heap_size,
        )?;

        Ok(Self {
            heap_id_len,
            heap_addr: addr,
            io_filter_len,
            flags,
            max_managed_obj_size,
            table_width,
            start_block_size,
            max_direct_block_size,
            max_heap_size,
            start_root_rows,
            root_block_addr,
            current_root_rows,
            num_managed_objects,
            has_checksum,
            sizeof_addr: reader.sizeof_addr(),
            sizeof_size: reader.sizeof_size(),
            huge_btree_addr,
            root_direct_filtered_size,
            root_direct_filter_mask,
            filter_pipeline,
        })
    }
}

fn validate_doubling_table_geometry(
    table_width: u16,
    start_block_size: u64,
    max_direct_block_size: u64,
    max_heap_size: u16,
) -> Result<()> {
    if table_width == 0 {
        return Err(Error::InvalidFormat(
            "fractal heap table width must be nonzero".into(),
        ));
    }
    if start_block_size == 0 || !start_block_size.is_power_of_two() {
        return Err(Error::InvalidFormat(
            "fractal heap start block size must be a nonzero power of two".into(),
        ));
    }
    if max_direct_block_size == 0 || !max_direct_block_size.is_power_of_two() {
        return Err(Error::InvalidFormat(
            "fractal heap max direct block size must be a nonzero power of two".into(),
        ));
    }
    if max_direct_block_size < start_block_size {
        return Err(Error::InvalidFormat(
            "fractal heap max direct block size is smaller than start block size".into(),
        ));
    }
    if max_heap_size > 64 {
        return Err(Error::Unsupported(format!(
            "fractal heap max heap size {max_heap_size} exceeds 64-bit offsets"
        )));
    }
    Ok(())
}

#[cfg(test)]
mod tests {
    use std::io::Cursor;

    use crate::format::checksum::checksum_metadata;
    use crate::io::HdfReader;

    use super::validate_doubling_table_geometry;
    use super::*;

    fn minimal_fractal_heap_header() -> Vec<u8> {
        let mut bytes = Vec::new();
        bytes.extend_from_slice(b"FRHP");
        bytes.push(0); // version
        bytes.extend_from_slice(&8u16.to_le_bytes()); // heap id length
        bytes.extend_from_slice(&0u16.to_le_bytes()); // filter length
        bytes.push(0); // flags
        bytes.extend_from_slice(&64u32.to_le_bytes()); // max managed object size
        bytes.extend_from_slice(&0u64.to_le_bytes()); // next huge id
        bytes.extend_from_slice(&crate::io::reader::UNDEF_ADDR.to_le_bytes()); // huge btree
        bytes.extend_from_slice(&0u64.to_le_bytes()); // managed free space
        bytes.extend_from_slice(&crate::io::reader::UNDEF_ADDR.to_le_bytes()); // free-space manager
        for _ in 0..8 {
            bytes.extend_from_slice(&0u64.to_le_bytes());
        }
        bytes.extend_from_slice(&4u16.to_le_bytes()); // table width
        bytes.extend_from_slice(&8u64.to_le_bytes()); // start block size
        bytes.extend_from_slice(&64u64.to_le_bytes()); // max direct block size
        bytes.extend_from_slice(&32u16.to_le_bytes()); // max heap size bits
        bytes.extend_from_slice(&0u16.to_le_bytes()); // starting root rows
        bytes.extend_from_slice(&crate::io::reader::UNDEF_ADDR.to_le_bytes()); // root block
        bytes.extend_from_slice(&0u16.to_le_bytes()); // current root rows
        let checksum = checksum_metadata(&bytes);
        bytes.extend_from_slice(&checksum.to_le_bytes());
        bytes
    }

    #[test]
    fn rejects_invalid_doubling_table_geometry() {
        assert!(validate_doubling_table_geometry(0, 8, 64, 32).is_err());
        assert!(validate_doubling_table_geometry(4, 0, 64, 32).is_err());
        assert!(validate_doubling_table_geometry(4, 12, 64, 32).is_err());
        assert!(validate_doubling_table_geometry(4, 64, 8, 32).is_err());
        assert!(validate_doubling_table_geometry(4, 8, 64, 65).is_err());
    }

    #[test]
    fn accepts_valid_doubling_table_geometry() {
        validate_doubling_table_geometry(4, 8, 64, 32).unwrap();
    }

    #[test]
    fn rejects_bad_header_checksum() {
        let mut bytes = minimal_fractal_heap_header();
        let last = bytes.len() - 1;
        bytes[last] ^= 0xff;
        let mut reader = HdfReader::new(Cursor::new(bytes));
        let err = FractalHeapHeader::read_at(&mut reader, 0)
            .expect_err("bad fractal heap header checksum should fail");
        assert!(err.to_string().contains("checksum"));
    }
}