hal-ml 0.2.0

HAL: a machine learning library that is able to run on Nvidia, OpenCL or CPU BLAS based compute backends. It currently provides stackable classical neural networks, RNN's and soon to be LSTM's. A differentiation of this package is that we are looking to implement RTRL (instead of just BPTT) for the recurrent layers in order to provide a solid framework for online learning. We will also (in the future) be implementing various layers such as unitary RNN's, NTM's and Adaptive Computation time based LSTM's. HAL also comes with the ability to plot and do many basic math operations on arrays.
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use af::{Array, Dim4, HasAfEnum, DType};
use std::default::Default;
use std::sync::{Arc, Mutex};

use utils;
use initializations;
use device::{Device, DeviceManager};
//use error::HAL Error;

macro_rules! set_param_vec_func {
  ($fn_name: ident, $vec_extension: ident, $base_type: ty) => (
    #[allow(unused_mut)]
    pub fn $fn_name(&self, layer_index: usize, p: Vec<$base_type>) {
      assert!(self.layer_storage.len() - 1 >= layer_index);
      let layer = self.layer_storage[layer_index].clone();
      let mut ltex = &mut layer.lock().unwrap();
      ltex.$vec_extension = p;
    }
    )
}

macro_rules! get_param_vec_func {
  ($fn_name: ident, $vec_extension: ident, $base_type: ty) => (
    #[allow(unused_mut)]
    pub fn $fn_name(&self, layer_index: usize) -> Vec<$base_type> {
      assert!(self.layer_storage.len() - 1 >= layer_index);
      let layer = self.layer_storage[layer_index].clone();
      let ltex = layer.lock().unwrap();
      ltex.$vec_extension.clone()
    }
    )
}

macro_rules! with_mut_param_vec_func {
  ($fn_name: ident, $vec_extension: ident, $base_type: ty) => (
    #[allow(unused_mut)]
    pub fn $fn_name<F>(&mut self, layer_index: usize, mut f: F)
      where F: FnMut(&mut Vec<$base_type>)
    {
      assert!(self.layer_storage.len() - 1 >= layer_index);
      let layer = self.layer_storage[layer_index].clone();
      f(&mut layer.lock().unwrap().$vec_extension);
    }
    )
}

macro_rules! set_param_func {
  ($fn_name: ident, $vec_extension: ident, $base_type: ty) => (
    #[allow(unused_mut)]
    pub fn $fn_name(&self, layer_index: usize, num: usize, p: $base_type) {
      assert!(self.layer_storage.len() - 1 >= layer_index);
      let layer = self.layer_storage[layer_index].clone();
      let mut ltex = layer.lock().unwrap();
      let mut ext = &mut ltex.$vec_extension;
      assert!(ext.len() - 1 >= num);
      ext[num] = p;
    }
    )
}

macro_rules! get_param_func {
  ($fn_name: ident, $vec_extension: ident, $base_type: ty) => (
    #[allow(unused_mut)]
    pub fn $fn_name(&self, layer_index: usize, num: usize) -> $base_type {
      assert!(self.layer_storage.len() - 1 >= layer_index);
      let layer = self.layer_storage[layer_index].clone();
      let mut ltex = layer.lock().unwrap();
      let mut ext = &ltex.$vec_extension;
      assert!(ext.len() - 1 >= num);
      ext[num].clone()
    }
    )
}

#[derive(Clone)]
pub struct Params {
  pub layer_type: String,
  pub device: Device,
  pub weights: Vec<Array>,
  pub biases: Vec<Array>,
  pub activations: Vec<String>,
  pub deltas: Vec<Array>,
  pub inputs: Vec<Array>,
  pub outputs: Vec<Array>,
  pub recurrences: Vec<Array>,
  pub current_unroll: usize,
  pub optional: Vec<Array>,
}

pub struct ParamManager {
  layer_storage: Vec<Arc<Mutex<Params>>>,
}

impl Default for ParamManager {
  fn default() -> ParamManager {
    ParamManager {
      layer_storage: Vec::new(),
    }
  }
}

impl ParamManager {
  pub fn add<T: HasAfEnum>(&mut self
                           , manager: DeviceManager
                           , device: Device
                           , layer_type: &str
                           , weight_params: Vec<(&str, (usize, usize))> //(init, (i, o))
                           , biases_params: Vec<(&str, (usize, usize))> //(init, (i, o))
                           , activations: Vec<&str>
                           , recurrence_dims: Option<Vec<(&str, (usize, usize))>>
                           , optional_dims: Option<Vec<(&str, (usize, usize))>>)
  {
    // toggle device to appropriate one
    manager.swap_device(device);
    let num_params = weight_params.len() + biases_params.len();

    // allocate deltas here so that they can be pushed in at each W/b add
    let mut deltas: Vec<Array> = Vec::with_capacity(num_params);

    // generate the weights
    let mut weights: Vec<Array> = Vec::with_capacity(weight_params.len());
    for (w_init, w_dims) in weight_params {
      weights.push(self.generate::<T>(w_init, w_dims));
      deltas.push(self.generate::<T>("zeros", w_dims));
    }
    // generate the biases
    let mut biases: Vec<Array> = Vec::with_capacity(biases_params.len());
    for (b_init, b_dims) in biases_params {
      //println!("orig bias size: {:?}", b_dims);
      biases.push(self.generate::<T>(b_init, b_dims));
      deltas.push(self.generate::<T>("zeros", b_dims));
    }

    // generate recurrence vectors
    // if the length of the recurrences are > 0 then init the inp/outputs
    let mut recurrences: Vec<Array> = Vec::new();
    let mut inputs: Vec<Array> = Vec::new();
    let mut outputs: Vec<Array> = Vec::new();
    if let Some(r) = recurrence_dims{
      for (r_init, r_dims) in r {
        recurrences.push(self.generate::<T>(r_init, r_dims));
        inputs.push(self.generate::<T>("zeros", (1, 1)));
        outputs.push(self.generate::<T>("zeros", (1, 1)));
      }

    }

    // some elements have optional params
    let mut optional: Vec<Array> = Vec::new();
    if let Some(o) = optional_dims {
      for (o_init, o_dims) in o {
        optional.push(self.generate::<T>(o_init, o_dims));
      }
    }

    let owned_activations = activations.iter().map(|x| x.to_string()).collect::<Vec<String>>();
    self.layer_storage.push(Arc::new(Mutex::new(Params{
      layer_type: layer_type.to_string(),
      device: device,
      weights: weights,
      biases: biases,
      activations: owned_activations,
      deltas: deltas,
      inputs: inputs,
      outputs: outputs,
      recurrences: recurrences,
      current_unroll: 0,
      optional: optional,
    })));
  }

  fn generate<T: HasAfEnum>(&self, init: &str, dims: (usize, usize)) -> Array {
    let dims = Dim4::new(&[dims.0 as u64, dims.1 as u64, 1, 1]);
    initializations::get_initialization::<T>(init, dims).unwrap()
  }

  pub fn num_layers(&self) -> usize {
    self.layer_storage.len()
  }

  pub fn num_weights(&self, layer_index: usize) -> usize {
    assert!(self.layer_storage.len() - 1 >= layer_index);
    let layer = self.layer_storage[layer_index].clone();
    let ltex = layer.lock().unwrap();
    ltex.weights.len()
  }

  pub fn num_biases(&self, layer_index: usize) -> usize {
    assert!(self.layer_storage.len() - 1 >= layer_index);
    let layer = self.layer_storage[layer_index].clone();
    let ltex = layer.lock().unwrap();
    ltex.biases.len()
  }

  pub fn num_arrays(&self, layer_index: usize) -> usize {
    assert!(self.layer_storage.len() - 1 >= layer_index);
    self.num_biases(layer_index) + self.num_weights(layer_index)
  }

  pub fn get_params(&self, layer_index: usize) -> Arc<Mutex<Params>> {
    assert!(self.layer_storage.len() - 1>= layer_index);
    self.layer_storage[layer_index].clone()
  }

  pub fn with_mut_params<F>(&self, layer_index: usize, mut f: F)
    where F: FnMut(&Params)
  {
    assert!(self.layer_storage.len() - 1 >= layer_index);
    let layer = self.layer_storage[layer_index].clone();
    f(&mut layer.lock().unwrap());
  }

  pub fn get_all_arrays(&self) -> Vec<Array> {
    let mut p = Vec::new();
    for layer_num in 0..self.num_layers() {
      p.extend(self.get_weights(layer_num));
      p.extend(self.get_biases(layer_num));
    }
    p
  }

  // assumes params are coming in layer wise
  // eg: [W0, b0, .. , WN, bN]
  pub fn set_array_from_index(&self, arr: Array, ind: usize) {
    let mut current: usize = 0;
    for layer_num in 0..self.num_layers() {
      let n_weights = self.num_weights(layer_num);
      let n_biases = self.num_biases(layer_num);

      if current + n_weights > ind { // we are a weight
        let w_index = ind - current;
        let target_dims = self.get_weight(layer_num, w_index).dims();
        let src_dims = arr.dims();
        assert!(src_dims == target_dims
                , "array at index {} does not match provided [provided: {:?}  internal: {:?}]"
                , ind, src_dims, target_dims);
        self.set_weight(layer_num, w_index, arr);
        break;
      }

      current += n_weights;
      if current + n_biases > ind { // we are a bias
        let b_index = ind - current;
        assert!(self.get_bias(layer_num, b_index).dims()
                == arr.dims());
        self.set_bias(layer_num, b_index, arr);
        break;
      }
      current += n_biases;
    }
  }

  // TODO:
  // pub fn get_mut_all_arrays(&mut self) -> Vec<&mut Array> {
  //   let mut p = Vec::new();
  //   for layer_num in 0..self.num_layers() {
  //     // p.extend(self.get_mut_weights(layer_num));
  //     // p.extend(self.get_mut_biases(layer_num));
  //     let mut storage = self.layer_storage[layer_num];
  //     p.push_all(&mut storage.weights[..]);
  //     p.push_all(&mut storage.biases[..]);
  //   }
  //   p
  // }


  // assumes params are coming in layer wise
  // eg: [W0, b0, .. , WN, bN]
  pub fn set_all_arrays(&mut self, params: Vec<Array>) {
    let mut index: usize = 0;
    for layer_num in 0..self.num_layers() {
      let n_weights = self.num_weights(layer_num);
      let n_biases = self.num_biases(layer_num);
      self.set_weights(layer_num, params[index..index+n_weights].to_vec());
      index += n_weights;
      self.set_biases(layer_num, params[index..index+n_biases].to_vec());
      index += n_biases;
    }
  }

  pub fn get_all_deltas(&self) -> Vec<Array> {
    let mut d = Vec::new();
    for layer_num in 0..self.num_layers() {
      d.extend(self.get_deltas(layer_num));
    }
    d
  }

  pub fn zero_all_deltas(&self, dtype: DType) {
    for layer_num in 0..self.num_layers() {
      for delta_num in 0..self.num_arrays(layer_num) {
        let delta_dims = self.get_delta(layer_num, delta_num).dims();
        let zero_tensor = utils::constant(delta_dims, dtype, 0.0f32);
        self.set_delta(layer_num, delta_num, zero_tensor);
      }
    }
  }

  get_param_func!(get_weight, weights, Array);
  get_param_func!(get_bias, biases, Array);
  get_param_func!(get_activation, activations, String);
  get_param_func!(get_delta, deltas, Array);
  get_param_func!(get_input, inputs, Array);
  get_param_func!(get_output, outputs, Array);
  get_param_func!(get_recurrence, recurrences, Array);
  get_param_func!(get_optional, optional, Array);

  get_param_vec_func!(get_weights, weights, Array);
  get_param_vec_func!(get_biases, biases, Array);
  get_param_vec_func!(get_activations, activations, String);
  get_param_vec_func!(get_deltas, deltas, Array);
  get_param_vec_func!(get_inputs, inputs, Array);
  get_param_vec_func!(get_outputs, outputs, Array);
  get_param_vec_func!(get_recurrences, recurrences, Array);
  get_param_vec_func!(get_optionals, optional, Array);

  with_mut_param_vec_func!(with_mut_weights, weights, Array);
  with_mut_param_vec_func!(with_mut_biases, biases, Array);
  with_mut_param_vec_func!(with_mut_activations, activations, String);
  with_mut_param_vec_func!(with_mut_deltas, deltas, Array);
  with_mut_param_vec_func!(with_mut_inputs, inputs, Array);
  with_mut_param_vec_func!(with_mut_outputs, outputs, Array);
  with_mut_param_vec_func!(with_mut_recurrences, recurrences, Array);
  with_mut_param_vec_func!(with_mut_optionals, optional, Array);

  set_param_func!(set_weight, weights, Array);
  set_param_func!(set_bias, biases, Array);
  set_param_func!(set_activation, activations, String);
  set_param_func!(set_delta, deltas, Array);
  set_param_func!(set_input, inputs, Array);
  set_param_func!(set_output, outputs, Array);
  set_param_func!(set_recurrence, recurrences, Array);
  set_param_func!(set_optional, optional, Array);

  set_param_vec_func!(set_weights, weights, Array);
  set_param_vec_func!(set_biases, biases, Array);
  set_param_vec_func!(set_activations, activations, String);
  set_param_vec_func!(set_deltas, deltas, Array);
  set_param_vec_func!(set_inputs, inputs, Array);
  set_param_vec_func!(set_outputs, outputs, Array);
  set_param_vec_func!(set_recurrences, recurrences, Array);
  set_param_vec_func!(set_optionals, optional, Array);

  pub fn get_bias_dims(&self, layer_index: usize) -> Vec<Dim4> {
    assert!(self.layer_storage.len() - 1 >= layer_index);
    let mut dims = Vec::new();
    let layer = self.layer_storage[layer_index].clone();
    for b in &layer.lock().unwrap().biases {
      dims.push(b.dims().clone());
    }
    dims
  }

  pub fn get_all_weight_dims(&self) -> Vec<Dim4> {
    let mut dims = Vec::new();
    for layer in &self.layer_storage {
      let ltex = layer.lock().unwrap();
      for w in &ltex.weights {
        dims.push(w.dims().clone());
      }
    }
    dims
  }

  pub fn get_all_bias_dims(&self) -> Vec<Dim4> {
    let mut dims = Vec::new();
    for layer in &self.layer_storage {
      let ltex = layer.lock().unwrap();
      for b in &ltex.biases {
        dims.push(b.dims().clone());
      }
    }
    dims
  }

  pub fn get_all_dims(&self) -> Vec<Dim4> {
    let mut dims = Vec::new();
    for layer in &self.layer_storage {
      let ltex = layer.lock().unwrap();
      for w in &ltex.weights {
        dims.push(w.dims().clone());
      }
      for b in &ltex.biases {
        dims.push(b.dims().clone());
      }
    }
    dims
  }


  pub fn get_weight_dims(&self, layer_index: usize) -> Vec<Dim4> {
    let mut dims = Vec::new();
    assert!(self.layer_storage.len() - 1 >= layer_index);
    let layer = self.layer_storage[layer_index].clone();
    for w in &layer.lock().unwrap().weights {
      dims.push(w.dims().clone());
    }
    dims
  }

  pub fn tie_weights(&mut self, layer_input: usize, iweight_index: usize
                     , layer_output: usize, oweight_index: usize)
  {
    assert!(self.layer_storage.len() - 1 >= layer_input);
    assert!(self.layer_storage.len() - 1 >= layer_output);

    let layer_src = self.layer_storage[layer_input].clone();
    let layer_dest = self.layer_storage[layer_output].clone();

    {
      let weights_src_len = layer_src.lock().unwrap().weights.len();
      let weights_dest_len = layer_dest.lock().unwrap().weights.len();
      assert!(weights_src_len - 1 >= iweight_index);
      assert!(weights_dest_len - 1 >= oweight_index);
    }


    {
      let iweights = layer_src.lock().unwrap();
      let oweights = layer_dest.lock().unwrap();
      let input_dims = iweights.weights[iweight_index].dims();
      let output_dims = oweights.weights[oweight_index].dims();
      assert!((input_dims[0] == output_dims[0] && input_dims[1] == output_dims[1])
              || (input_dims[0] == output_dims[1] && input_dims[1] == output_dims[0]));
    }

    layer_dest.lock().unwrap().weights[oweight_index]
      = layer_src.lock().unwrap().weights[iweight_index].clone();
  }

  pub fn tie_bias(&mut self, layer_input: usize, ibias_index: usize
                  , layer_output: usize, obias_index: usize)
  {
    assert!(self.layer_storage.len() - 1 >= layer_input);
    assert!(self.layer_storage.len() - 1 >= layer_output);
    let layer_src = self.layer_storage[layer_input].clone();
    let layer_dest = self.layer_storage[layer_output].clone();

    {
      let biases_src_len = layer_src.lock().unwrap().biases.len();
      let biases_dest_len = layer_dest.lock().unwrap().biases.len();
      assert!(biases_src_len - 1 >= ibias_index);
      assert!(biases_dest_len - 1 >= obias_index);
    }

    {
      let input_dims = layer_src.lock().unwrap().biases[ibias_index].dims();
      let output_dims = layer_dest.lock().unwrap().biases[obias_index].dims();
      assert!(input_dims[0] == output_dims[0] && input_dims[1] == output_dims[1]);
    }

    layer_dest.lock().unwrap().biases[obias_index]
      = layer_src.lock().unwrap().biases[ibias_index].clone();
  }
}

/** Custom Layer Traits **/
pub trait DenseGenerator {
  fn add_dense<T: HasAfEnum>(&mut self
                             , manager: DeviceManager
                             , device: Device
                             , input_size: usize
                             , output_size: usize
                             , activation: &str
                             , w_init: &str
                             , b_init: &str);

}

pub trait RNNGenerator {
  fn add_rnn<T: HasAfEnum>(&mut self
                           , manager: DeviceManager
                           , device: Device
                           , input_size: usize
                           , output_size: usize
                           //, bptt_interval: usize
                           , activation: &str
                           , w_init: &str
                           , w_recurrent_init: &str
                           , b_init: &str);
}

pub enum LSTMIndex {
  Input,      // i_t
  Forget,     // f_t
  Output,     // o_t
  CellTilda,  // ct_t
  Cell,       // c_t
  CellOutput, // h_t
}

pub trait LSTMGenerator {
  fn add_lstm<T: HasAfEnum>(&mut self
                            , manager: DeviceManager
                            , device: Device
                            , input_size: usize
                            , output_size: usize
                            , bptt_interval: usize
                            , input_activation: &str
                            , output_activation: &str
                            , w_init: &str
                            , w_recurrent_init: &str
                            , forget_bias_init: &str
                            , b_init: &str);
}

/** Custom Layer Impls **/
impl DenseGenerator for ParamManager {
  fn add_dense<T: HasAfEnum>(&mut self
                             , manager: DeviceManager
                             , device: Device
                             , input_size: usize
                             , output_size: usize
                             , activation: &str
                             , w_init: &str
                             , b_init: &str)
  {
    self.add::<T>(manager, device, "dense"
                  , vec![(w_init, (input_size, output_size))]
                  , vec![(b_init, (output_size, 1))]
                  , vec![activation]
                  , None, None);
  }
}

impl RNNGenerator for ParamManager {
  fn add_rnn<T: HasAfEnum>(&mut self
                           , manager: DeviceManager
                           , device: Device
                           , input_size: usize
                           , output_size: usize
                           //, bptt_interval: usize
                           , activation: &str
                           , w_init: &str
                           , w_recurrent_init: &str
                           , b_init: &str)
  {
    let recurrent_weight_dims = (output_size, output_size);
    let input_dims = (input_size, output_size);
    let bias_dims = (output_size, 1);

    let mut weights = vec![(w_init, input_dims)];
    let recurrent_weights = vec![(w_recurrent_init, recurrent_weight_dims)];
    weights.extend(recurrent_weights); // all weights are passed as one to the add func

    self.add::<T>(manager, device, "rnn"
                  , weights                                            // weight dims
                  , vec![(b_init, bias_dims)]                          // bias dims
                  , vec![activation]                                   // activation vector
                  , None//, Some(vec![("zeros", bias_dims); bptt_interval + 1]) // h_tm1 = sizeof(bias)
                  , None);
  }
}

impl LSTMGenerator for ParamManager {
  fn add_lstm<T: HasAfEnum>(&mut self
              , manager: DeviceManager
              , device: Device
              , input_size: usize
              , output_size: usize
              , bptt_interval: usize
              , inner_activation: &str
              , outer_activation: &str
              , w_init: &str
              , w_recurrent_init: &str
              , forget_b_init: &str
              , b_init: &str)
  {
    let input_dims = (input_size, output_size);
    let recurrent_dims = (output_size, output_size);
    let bias_dims = (output_size, 1);
    // W_i, W_f, W_o, W_ct, U_i, U_f, U_o, U_ct
    self.add::<T>(manager, device, "lstm"
             , vec![(w_init, input_dims)
                    , (w_init, input_dims)
                    , (w_init, input_dims)
                    , (w_init, input_dims)
                    , (w_recurrent_init, recurrent_dims)
                    , (w_recurrent_init, recurrent_dims)
                    , (w_recurrent_init, recurrent_dims)
                    , (w_recurrent_init, recurrent_dims)]
             , vec![(b_init, bias_dims)
                    , (forget_b_init, bias_dims)
                    , (b_init, bias_dims)
                    , (b_init, bias_dims)]
             , vec![inner_activation, outer_activation]
             , Some(vec![("zeros", bias_dims); 6])   // i_f_o_ct_c_h @ t-1
             , Some(vec![("zeros", input_dims)       // dW
                         , ("zeros", recurrent_dims) // dU
                         , ("zeros", bias_dims)]));  // db
  }
}