gwseq-io 0.2.0

Rust library for processing bigWig, bigBed, BAM and HiC files
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.85"
name = "gwseq-io"
version = "0.2.0"
authors = ["Arthur Gouhier <ajgouhier@gmail.com>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Rust library for processing bigWig, bigBed, BAM and HiC files"
readme = "README.md"
keywords = [
    "bigwig",
    "bigbed",
    "bam",
    "hic",
    "genomics",
]
categories = [
    "science",
    "parser-implementations",
]
license = "BSD-3-Clause"
repository = "https://github.com/ajgouhier/gwseq_io"

[package.metadata.docs.rs]
all-features = true

[features]
default = [
    "url",
    "npz",
]
fuzzing = []
npz = ["dep:ndarray-npy"]
url = [
    "dep:ureq",
    "dep:serde",
    "dep:serde_json",
]

[lib]
name = "gwseq_io"
path = "src/lib.rs"

[[example]]
name = "cat"
path = "examples/cat.rs"

[[example]]
name = "section_policy"
path = "examples/section_policy.rs"

[[example]]
name = "timeit"
path = "examples/timeit.rs"

[[example]]
name = "zoombench"
path = "examples/zoombench.rs"

[[test]]
name = "bam_roundtrip"
path = "tests/bam_roundtrip.rs"

[[test]]
name = "hic_roundtrip"
path = "tests/hic_roundtrip.rs"

[[test]]
name = "properties"
path = "tests/properties.rs"

[[test]]
name = "roundtrip"
path = "tests/roundtrip.rs"

[[test]]
name = "source_stack"
path = "tests/source_stack.rs"

[[bench]]
name = "extract"
path = "benches/extract.rs"
harness = false

[[bench]]
name = "writer"
path = "benches/writer.rs"
harness = false

[dependencies.bytes]
version = "1"

[dependencies.flate2]
version = "1"
features = ["zlib-rs"]
default-features = false

[dependencies.indexmap]
version = "2"

[dependencies.memchr]
version = "2"

[dependencies.ndarray]
version = "0.17"

[dependencies.ndarray-npy]
version = "0.10"
features = ["npz"]
optional = true
default-features = false

[dependencies.parking_lot]
version = "0.12"

[dependencies.rayon]
version = "1"

[dependencies.serde]
version = "1"
features = ["derive"]
optional = true

[dependencies.serde_json]
version = "1"
optional = true

[dependencies.thiserror]
version = "2"

[dependencies.ureq]
version = "3"
optional = true

[dev-dependencies.criterion]
version = "0.8"

[dev-dependencies.proptest]
version = "1"