gtftools 0.1.9

A barebones GTF toolkit with fast nom-based IO
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81

use crate::parse::parse_optional_bytes;
use serde::{Deserialize, Serialize};

#[derive(Debug, Default, Clone, Serialize, Deserialize)]
pub struct Attribute {
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub ccds_id: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub exon_id: Option<Vec<u8>>,
    #[serde(skip_serializing_if = "Option::is_none")]
    pub exon_number: Option<usize>,
    #[serde(skip_serializing_if = "Option::is_none")]
    pub exon_version: Option<usize>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub gene_biotype: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub gene_id: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub gene_name: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub gene_source: Option<Vec<u8>>,
    #[serde(skip_serializing_if = "Option::is_none")]
    pub gene_version: Option<usize>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub protein_id: Option<Vec<u8>>,
    #[serde(skip_serializing_if = "Option::is_none")]
    pub protein_version: Option<usize>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub tag: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub transcript_biotype: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub transcript_id: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub transcript_name: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub transcript_source: Option<Vec<u8>>,
    #[serde(
        serialize_with = "parse_optional_bytes",
        skip_serializing_if = "Option::is_none"
    )]
    pub transcript_support_level: Option<Vec<u8>>,
    #[serde(skip_serializing_if = "Option::is_none")]
    pub transcript_version: Option<usize>,
}