gtdb_tree

A library for parsing Newick format files, especially GTDB tree files.

Features

• Parse Newick formatted strings into a structured representation of trees.
• Handle various formats of Newick strings, including those with bootstrap values and distances.

Installation

Add this crate to your Cargo.toml:

[dependencies]
gtdb_tree = "0.1.0"

Usage

Here's a simple example of how to use the library:

use gtdb_tree::tree::parse_tree;

fn main() {
    let newick_str = "((A:0.1,B:0.2):0.3,C:0.4);";
    match parse_tree(newick_str) {
        Ok(nodes) => println!("Parsed nodes: {:?}", nodes),
        Err(e) => println!("Error parsing: {:?}", e),
    }
}

Python Usage

A Python package for parsing GTDB trees using Rust.

Installation

pip install gtdb_tree

Usage

import gtdb_tree

result = gtdb_tree.parse_tree("((A:0.1,B:0.2):0.3,C:0.4);")
print(result)