gsva-rust 0.1.0

Pure-Rust port of the GSVA family of gene-set enrichment methods (GSVA, ssGSEA, z-score, PLAGE), validated for numeric parity against the Bioconductor GSVA package.
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.85"
name = "gsva-rust"
version = "0.1.0"
build = false
exclude = [
    "/benchmarks",
    "/examples",
    "/scratch",
]
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Pure-Rust port of the GSVA family of gene-set enrichment methods (GSVA, ssGSEA, z-score, PLAGE), validated for numeric parity against the Bioconductor GSVA package."
readme = "README.md"
keywords = [
    "bioinformatics",
    "gsva",
    "ssgsea",
    "gene-set",
    "rna-seq",
]
categories = ["science"]
license = "Artistic-2.0"
repository = "https://github.com/sinmojito/gsva-rust"

[features]
default = [
    "parallel",
    "faer",
]
faer = ["dep:faer"]
parallel = ["dep:rayon"]

[lib]
name = "gsva"
path = "src/lib.rs"

[[test]]
name = "parity_gsva"
path = "tests/parity_gsva.rs"

[[test]]
name = "parity_plage"
path = "tests/parity_plage.rs"

[[test]]
name = "parity_ssgsea"
path = "tests/parity_ssgsea.rs"

[[test]]
name = "parity_zscore"
path = "tests/parity_zscore.rs"

[dependencies.faer]
version = "0.24"
features = [
    "std",
    "linalg",
]
optional = true
default-features = false

[dependencies.rayon]
version = "1"
optional = true