gsearch 0.1.5

genome classification, probminhash hnsw, genome search
Documentation 
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[[bin]]
name = "FragGeneScanRs"
path = "src/bin/FragGeneScanRs.rs"

[[bin]]
name = "bigsig"
path = "src/bin/bigsig.rs"

[[bin]]
name = "gsearch"
path = "src/bin/gsearch.rs"

[[bin]]
name = "reformat"
path = "src/bin/reformat.rs"

[[bin]]
name = "superaai"
path = "src/bin/superaai.rs"

[[bin]]
name = "superani"
path = "src/bin/superani.rs"

[dependencies.annembed]
optional = true
version = "=0.1.4"

[dependencies.anyhow]
version = "1.0.58"

[dependencies.bigsig]
version = "0.1.0"

[dependencies.chrono]
version = "0.4"

[dependencies.clap]
version = "4.5"

[dependencies.concurrent-queue]
version = "2.5"

[dependencies.cpu-time]
version = "1.0"

[dependencies.crossbeam]
version = "0.8"

[dependencies.crossbeam-channel]
version = "0.5"

[dependencies.crossbeam-utils]
version = "0.8"

[dependencies.csv]
version = "1.1"

[dependencies.env_logger]
version = "0.11"

[dependencies.frag_gene_scan_rs]
version = "1.1.0"

[dependencies.fxhash]
version = "0.2"

[dependencies.hnsw_rs]
version = "=0.3.1"

[dependencies.kmerutils]
version = "=0.0.12"

[dependencies.lazy_static]
version = "1.4"

[dependencies.log]
version = "0.4"

[dependencies.memory-stats]
features = ["always_use_statm"]
version = "1.1"

[dependencies.needletail]
version = "=0.5.1"

[dependencies.num]
version = "0.4"

[dependencies.num_cpus]
version = "1.13.0"

[dependencies.parking_lot]
version = "0.12"

[dependencies.probminhash]
version = "0.1.11"

[dependencies.rayon]
version = "1.10"

[dependencies.seq_io]
version = "0.3.1"

[dependencies.serde]
features = ["derive"]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.skani]
version = "0.1.0"

[dependencies.sourmash]
version = "0.15.1"

[dependencies.strum]
version = "0.21.0"

[dependencies.strum_macros]
version = "0.21.0"

[dependencies.thiserror]
version = "1.0.25"

[features]
annembed_accelerate = ["annembed/macos-accelerate"]
annembed_intel-mkl = ["annembed/intel-mkl-static"]
annembed_openblas-static = ["annembed/openblas-static"]
annembed_openblas-system = ["annembed/openblas-system"]
default = []
simdeez_f = ["hnsw_rs/simdeez_f", "kmerutils/simdeez_f"]
withzmq = ["kmerutils/withzmq"]

[lib]
name = "gsearch"
path = "src/lib.rs"

[package]
authors = ["jeanpierre.both@gmail.com", "jianshuzhao@yahoo.com"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = false
description = "genome classification, probminhash hnsw, genome search"
edition = "2021"
keywords = ["hnsw", "probminhash", "bacteria", "genomes"]
license = "MIT OR Apache-2.0"
name = "gsearch"
readme = "README.md"
repository = "https://github.com/jean-pierreBoth/gsearch"
version = "0.1.5"