##fileformat=VCFv4.2
##source=minos, version 0.4.1
##fileDate=2018-04-26
##FORMAT=<ID=COV,Number=R,Type=Integer,Description="Number of reads on ref and alt alleles">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="total kmer depth from gramtools",Source="minos">
##FORMAT=<ID=GT_CONF,Number=1,Type=Float,Description="Genotype confidence. Difference in log likelihood of most likely and next most likely genotype">
##INFO=<ID=KMER,Number=1,Type=Integer,Description="Kmer size at which variant was discovered (kmer-size used by gramtools build)">
##minos_max_read_length=200
##contig=<ID=TEST_DNA,length=99>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 03.vcf
TEST_DNA 2 . A G . PASS KMER=15 GT:DP:COV:GT_CONF ./.:2:1,1:2.05
TEST_DNA 4 . A G,T . MIN_GCP;MIN_DP;MIN_FRS KMER=15 GT:DP:COV:GT_CONF ./.:4:1,2,1:3.77
TEST_DNA 6 . AAA GGT,GTA,ATA . PASS KMER=15 GT:DP:COV:GT_CONF ./.:4:1,1,1,1:2.76
TEST_DNA 12 . C T . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:50:0,50:200.58
TEST_DNA 14 . C T,G . PASS KMER=15 GT:DP:COV:GT_CONF 2/2:45:0,2,43:155.58
TEST_DNA 16 . CCC TGC,GTG . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:70:0,68,8:300.25
TEST_DNA 22 . G T,C,A . PASS KMER=15 GT:DP:COV:GT_CONF 1/2:202:1,99,100,2:613.77
TEST_DNA 24 . G T,C,A . PASS KMER=15 GT:DP:COV:GT_CONF 0/2:202:99,1,100,2:613.77
TEST_DNA 26 . GG AA,CT,AT . PASS KMER=15 GT:DP:COV:GT_CONF 1/2:100:0,48,50,2:475.54
TEST_DNA 28 . GG AA,T,A . PASS KMER=15 GT:DP:COV:GT_CONF 1/3:100:0,48,2,50:315.11
TEST_DNA 33 . T TTT . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:200:1,199:145.21
TEST_DNA 36 . TT T . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:200:1,199:145.21
TEST_DNA 39 . TT AGT . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:200:1,199:145.21
TEST_DNA 65 . GG CAGG . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:200:1,199:145.21
TEST_DNA 69 . GG GG . PASS KMER=15 GT:DP:COV:GT_CONF 0/0:200:1,199:145.21
TEST_DNA 73 . T TA,AT . PASS KMER=15 GT:DP:COV:GT_CONF 1/1:200:1,198,1:145.21