[package]
edition = "2021"
name = "grepq"
version = "1.6.6"
authors = ["Nicholas D. Crosbie"]
build = "build.rs"
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "quickly filter fastq files"
homepage = "https://github.com/Rbfinch/grepq"
documentation = "https://github.com/Rbfinch/grepq"
readme = "README.md"
keywords = [
"bioinformatics",
"FASTQ",
"REGEX",
"JSON",
"cli",
]
categories = ["science"]
license = "MIT"
repository = "https://github.com/Rbfinch/grepq"
[lib]
name = "grepq"
path = "src/lib.rs"
[[bin]]
name = "grepq"
path = "src/main.rs"
[[bench]]
name = "benchmarks"
path = "benches/benchmarks.rs"
harness = false
[dependencies.chrono]
version = "0.4.44"
[dependencies.clap]
version = "4.6.1"
features = [
"derive",
"cargo",
]
[dependencies.clap-markdown]
version = "0.1.5"
[dependencies.colored]
version = "3.1.1"
[dependencies.flate2]
version = "1.1.9"
features = ["zlib-ng"]
default-features = false
[dependencies.jsonschema]
version = "0.46.0"
[dependencies.mimalloc]
version = "0.1.48"
[dependencies.num_cpus]
version = "1.17.0"
[dependencies.phf]
version = "0.13.1"
[dependencies.regex]
version = "1.12.3"
[dependencies.rusqlite]
version = "0.39.0"
[dependencies.seq_io]
version = "0.3.4"
[dependencies.serde]
version = "1.0.228"
[dependencies.serde_json]
version = "1.0.149"
[dependencies.zstd]
version = "0.13.3"
[dev-dependencies.criterion]
version = "0.8.2"
features = ["html_reports"]
[dev-dependencies.tempfile]
version = "3.27.0"
[build-dependencies.phf]
version = "0.13.1"
[build-dependencies.phf_codegen]
version = "0.13.1"
[profile.release]
lto = true